Guide to the Human Genome
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Name: TPM4 Sequence: fasta or formatted (284aa) NCBI GI: 223555975
Description:

tropomyosin 4 isoform 1

Referenced in:

Muscle

Other entries for this name:
alt prot [248aa] tropomyosin 4 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         33           2
 C cysteine            1.1          3           1
 D aspartate           7.0         20           2
 E glutamate          21.5         61           3
 F phenylalanine       0.4          1           1
 G glycine             2.1          6           1
 H histidine           1.1          3           1
 I isoleucine          3.5         10           1
 K lysine             13.7         39           3
 L leucine            12.0         34           2
 M methionine          2.5          7           1
 N asparagine          3.2          9           2
 P proline             0.0          0           0
 Q glutamine           4.6         13           1
 R arginine            4.6         13           2
 S serine              2.8          8           1
 T threonine           3.5         10           1
 V valine              3.5         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tropomyosin 4 isoform 1 
TPM1                  0.854   tropomyosin 1 alpha chain isoform 3 
TPM2                  0.823   tropomyosin 2 (beta) isoform 2 
TPM2                  0.814   tropomyosin 2 (beta) isoform 1 
TPM1                  0.812   tropomyosin 1 alpha chain isoform 4 
TPM3                  0.812   tropomyosin 3 isoform 1 
TPM1                  0.810   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.773   tropomyosin 1 alpha chain isoform 2 
TPM1                  0.765   tropomyosin 1 alpha chain isoform 5 
TPM1                  0.730   tropomyosin 1 alpha chain isoform 7 
TPM4                  0.722   tropomyosin 4 isoform 2 
TPM3                  0.600   tropomyosin 3 isoform 4 
TPM3                  0.583   tropomyosin 3 isoform 5 
TPM1                  0.575   tropomyosin 1 alpha chain isoform 6 
TPM3                  0.563   tropomyosin 3 isoform 2 
TPM3                  0.546   tropomyosin 3 isoform 3 
TPM2                  0.509   tropomyosin 2 (beta) isoform 3 
LOC645202             0.124   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.113   PREDICTED: Putative golgin subfamily A member 6-lik...
CLIP1                 0.111   restin isoform b 
CLIP1                 0.111   restin isoform a 
LOC283685             0.109   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283767             0.107   golgi autoantigen, golgin subfamily a-like 
MYH9                  0.107   myosin, heavy polypeptide 9, non-muscle 
LOC400352             0.107   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.107   PREDICTED: similar to Putative golgin subfamily A m...
LOC727832             0.103   golgi autoantigen, golgin subfamily a-like 
MYH10                 0.103   myosin, heavy polypeptide 10, non-muscle 
FYCO1                 0.103   FYVE and coiled-coil domain containing 1 
CCDC18                0.101   sarcoma antigen NY-SAR-41 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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