Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SMC6 Sequence: fasta or formatted (1091aa) NCBI GI: 214010216
Description:

SMC6 protein

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt mRNA [1091aa] SMC6 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         71           2
 C cysteine            1.6         17           2
 D aspartate           6.0         66           3
 E glutamate          10.9        119           2
 F phenylalanine       3.4         37           2
 G glycine             3.8         41           2
 H histidine           2.4         26           1
 I isoleucine          5.9         64           2
 K lysine              9.6        105           3
 L leucine             9.5        104           2
 M methionine          2.8         31           1
 N asparagine          5.1         56           2
 P proline             2.6         28           2
 Q glutamine           5.8         63           2
 R arginine            6.8         74           2
 S serine              6.7         73           2
 T threonine           3.5         38           2
 V valine              4.4         48           2
 W tryptophan          0.3          3           1
 Y tyrosine            2.5         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SMC6 protein 
SMC6                  1.000   SMC6 protein 
SMC5                  0.056   SMC5 protein 
KTN1                  0.036   kinectin 1 isoform a 
KTN1                  0.036   kinectin 1 isoform a 
MYH7                  0.035   myosin, heavy chain 7, cardiac muscle, beta 
KTN1                  0.034   kinectin 1 isoform b 
MYH6                  0.033   myosin heavy chain 6 
KTN1                  0.033   kinectin 1 isoform c 
MYH8                  0.032   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH11                 0.030   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.030   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.030   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.030   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH4                  0.029   myosin, heavy polypeptide 4, skeletal muscle 
SMC3                  0.029   structural maintenance of chromosomes 3 
SMC4                  0.029   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.029   SMC4 structural maintenance of chromosomes 4-like 1 ...
MYH1                  0.029   myosin, heavy chain 1, skeletal muscle, adult [Homo...
GOLGA4                0.027   golgi autoantigen, golgin subfamily a, 4 
GOLGA3                0.027   Golgi autoantigen, golgin subfamily a, 3 
EEA1                  0.026   early endosome antigen 1, 162kD 
SMC1A                 0.026   structural maintenance of chromosomes 1A 
CCDC46                0.025   coiled-coil domain containing 46 isoform a 
ROCK2                 0.024   Rho-associated, coiled-coil containing protein kinas...
SYCP1                 0.024   synaptonemal complex protein 1 
MYH9                  0.024   myosin, heavy polypeptide 9, non-muscle 
AKAP9                 0.024   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.024   A-kinase anchor protein 9 isoform 3 
ROCK1                 0.024   Rho-associated, coiled-coil containing protein kinase...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press