Guide to the Human Genome
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Name: BIN1 Sequence: fasta or formatted (497aa) NCBI GI: 21536407
Description:

bridging integrator 1 isoform 4

Referenced in:

Myc and Related Functions
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [593aa] bridging integrator 1 isoform 1
alt prot [550aa] bridging integrator 1 isoform 2
alt prot [506aa] bridging integrator 1 isoform 3
alt prot [518aa] bridging integrator 1 isoform 5
alt prot [482aa] bridging integrator 1 isoform 6
alt prot [475aa] bridging integrator 1 isoform 7
alt prot [439aa] bridging integrator 1 isoform 9
alt prot [409aa] bridging integrator 1 isoform 10
alt prot [454aa] bridging integrator 1 isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         43           2
 C cysteine            0.6          3           1
 D aspartate           5.0         25           1
 E glutamate           9.7         48           3
 F phenylalanine       3.4         17           1
 G glycine             6.4         32           2
 H histidine           2.0         10           2
 I isoleucine          2.2         11           1
 K lysine              9.3         46           3
 L leucine             8.0         40           2
 M methionine          1.8          9           1
 N asparagine          4.6         23           2
 P proline             7.2         36           4
 Q glutamine           6.2         31           1
 R arginine            3.6         18           2
 S serine              6.2         31           3
 T threonine           5.6         28           2
 V valine              6.6         33           3
 W tryptophan          1.0          5           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bridging integrator 1 isoform 4 
BIN1                  0.961   bridging integrator 1 isoform 6 
BIN1                  0.943   bridging integrator 1 isoform 5 
BIN1                  0.889   bridging integrator 1 isoform 8 
BIN1                  0.872   bridging integrator 1 isoform 7 
BIN1                  0.855   bridging integrator 1 isoform 3 
BIN1                  0.854   bridging integrator 1 isoform 1 
BIN1                  0.850   bridging integrator 1 isoform 9 
BIN1                  0.846   bridging integrator 1 isoform 2 
BIN1                  0.719   bridging integrator 1 isoform 10 
AMPH                  0.410   amphiphysin isoform 2 
AMPH                  0.410   amphiphysin isoform 1 
BIN2                  0.297   bridging integrator 2 
BIN3                  0.033   bridging integrator 3 
DNMBP                 0.025   dynamin binding protein 
NACA                  0.025   nascent polypeptide-associated complex alpha subuni...
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 1 
NCOR2                 0.023   nuclear receptor co-repressor 2 isoform 2 
UBASH3A               0.022   ubiquitin associated and SH3 domain containing, A sh...
UBASH3A               0.022   ubiquitin associated and SH3 domain containing, A lon...
ABI2                  0.021   abl interactor 2 
SFRS15                0.021   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.021   splicing factor, arginine/serine-rich 15 isoform 1 [...
NEB                   0.020   nebulin 
TAF4                  0.020   TBP-associated factor 4 
PRR12                 0.020   proline rich 12 
KIAA0754              0.018   hypothetical protein LOC643314 
SPAG9                 0.018   sperm associated antigen 9 isoform 1 
SRRM1                 0.018   serine/arginine repetitive matrix 1 
AGAP2                 0.018   centaurin, gamma 1 isoform PIKE-L 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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