Guide to the Human Genome
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Name: BIN1 Sequence: fasta or formatted (506aa) NCBI GI: 21536404
Description:

bridging integrator 1 isoform 3

Referenced in:

Myc and Related Functions
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [593aa] bridging integrator 1 isoform 1
alt prot [550aa] bridging integrator 1 isoform 2
alt prot [497aa] bridging integrator 1 isoform 4
alt prot [518aa] bridging integrator 1 isoform 5
alt prot [482aa] bridging integrator 1 isoform 6
alt prot [475aa] bridging integrator 1 isoform 7
alt prot [439aa] bridging integrator 1 isoform 9
alt prot [409aa] bridging integrator 1 isoform 10
alt prot [454aa] bridging integrator 1 isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         53           2
 C cysteine            0.8          4           1
 D aspartate           4.7         24           1
 E glutamate           9.7         49           3
 F phenylalanine       3.0         15           1
 G glycine             7.1         36           2
 H histidine           2.0         10           2
 I isoleucine          1.8          9           1
 K lysine              7.7         39           3
 L leucine             8.3         42           2
 M methionine          1.8          9           1
 N asparagine          4.7         24           2
 P proline             7.1         36           2
 Q glutamine           6.9         35           1
 R arginine            2.8         14           1
 S serine              6.3         32           3
 T threonine           5.5         28           1
 V valine              6.3         32           3
 W tryptophan          1.4          7           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bridging integrator 1 isoform 3 
BIN1                  0.979   bridging integrator 1 isoform 2 
BIN1                  0.921   bridging integrator 1 isoform 7 
BIN1                  0.899   bridging integrator 1 isoform 5 
BIN1                  0.860   bridging integrator 1 isoform 1 
BIN1                  0.847   bridging integrator 1 isoform 6 
BIN1                  0.837   bridging integrator 1 isoform 4 
BIN1                  0.817   bridging integrator 1 isoform 8 
BIN1                  0.798   bridging integrator 1 isoform 9 
BIN1                  0.718   bridging integrator 1 isoform 10 
AMPH                  0.330   amphiphysin isoform 2 
AMPH                  0.330   amphiphysin isoform 1 
BIN2                  0.280   bridging integrator 2 
SALL3                 0.029   sal-like 3 
TRIO                  0.026   triple functional domain (PTPRF interacting) 
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 1 
BIN3                  0.023   bridging integrator 3 
NACA                  0.023   nascent polypeptide-associated complex alpha subuni...
UNCX                  0.022   UNC homeobox 
MUC7                  0.022   mucin 7, secreted precursor 
MUC7                  0.022   mucin 7, secreted precursor 
MUC7                  0.022   mucin 7, secreted precursor 
MYH10                 0.022   myosin, heavy polypeptide 10, non-muscle 
MUPCDH                0.022   mucin and cadherin-like isoform 1 
SPTAN1                0.022   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.022   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
OGFR                  0.022   opioid growth factor receptor 
TAF4                  0.022   TBP-associated factor 4 
KIAA0754              0.021   hypothetical protein LOC643314 
UBASH3A               0.021   ubiquitin associated and SH3 domain containing, A sh...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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