Guide to the Human Genome
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Name: BIN1 Sequence: fasta or formatted (518aa) NCBI GI: 21536409
Description:

bridging integrator 1 isoform 5

Referenced in:

Myc and Related Functions
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [593aa] bridging integrator 1 isoform 1
alt prot [550aa] bridging integrator 1 isoform 2
alt prot [506aa] bridging integrator 1 isoform 3
alt prot [497aa] bridging integrator 1 isoform 4
alt prot [482aa] bridging integrator 1 isoform 6
alt prot [475aa] bridging integrator 1 isoform 7
alt prot [439aa] bridging integrator 1 isoform 9
alt prot [409aa] bridging integrator 1 isoform 10
alt prot [454aa] bridging integrator 1 isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         49           2
 C cysteine            0.6          3           1
 D aspartate           4.8         25           1
 E glutamate          10.0         52           3
 F phenylalanine       3.3         17           1
 G glycine             6.9         36           2
 H histidine           1.9         10           2
 I isoleucine          2.1         11           1
 K lysine              7.9         41           3
 L leucine             7.5         39           2
 M methionine          1.7          9           1
 N asparagine          4.2         22           2
 P proline             8.3         43           4
 Q glutamine           6.4         33           1
 R arginine            2.7         14           1
 S serine              6.8         35           3
 T threonine           6.0         31           2
 V valine              6.6         34           3
 W tryptophan          1.2          6           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bridging integrator 1 isoform 5 
BIN1                  0.964   bridging integrator 1 isoform 1 
BIN1                  0.909   bridging integrator 1 isoform 6 
BIN1                  0.899   bridging integrator 1 isoform 4 
BIN1                  0.894   bridging integrator 1 isoform 7 
BIN1                  0.892   bridging integrator 1 isoform 2 
BIN1                  0.877   bridging integrator 1 isoform 3 
BIN1                  0.757   bridging integrator 1 isoform 9 
BIN1                  0.747   bridging integrator 1 isoform 8 
BIN1                  0.574   bridging integrator 1 isoform 10 
AMPH                  0.413   amphiphysin isoform 2 
AMPH                  0.406   amphiphysin isoform 1 
BIN2                  0.300   bridging integrator 2 
KIAA0754              0.033   hypothetical protein LOC643314 
BIN3                  0.031   bridging integrator 3 
NCOR2                 0.029   nuclear receptor co-repressor 2 isoform 1 
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
MUC7                  0.029   mucin 7, secreted precursor 
MUC7                  0.029   mucin 7, secreted precursor 
MUC7                  0.029   mucin 7, secreted precursor 
NCOR2                 0.026   nuclear receptor co-repressor 2 isoform 2 
PRG4                  0.025   proteoglycan 4 isoform D 
PRG4                  0.025   proteoglycan 4 isoform C 
PRG4                  0.025   proteoglycan 4 isoform B 
PRG4                  0.025   proteoglycan 4 isoform A 
MUC2                  0.025   mucin 2 precursor 
PRR12                 0.025   proline rich 12 
DNMBP                 0.024   dynamin binding protein 
CIC                   0.024   capicua homolog 
GRM5                  0.023   glutamate receptor, metabotropic 5 isoform a precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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