Guide to the Human Genome
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Name: ADH1A Sequence: fasta or formatted (375aa) NCBI GI: 4501929
Description:

class I alcohol dehydrogenase, alpha subunit

Referenced in:

Alcohol and Aldehyde Dehydrogenases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         31           2
 C cysteine            4.3         16           2
 D aspartate           4.5         17           2
 E glutamate           5.3         20           2
 F phenylalanine       4.0         15           1
 G glycine             9.6         36           2
 H histidine           2.1          8           2
 I isoleucine          6.9         26           2
 K lysine              8.5         32           2
 L leucine             7.7         29           3
 M methionine          2.9         11           2
 N asparagine          2.9         11           1
 P proline             5.3         20           2
 Q glutamine           1.9          7           1
 R arginine            2.4          9           2
 S serine              6.1         23           1
 T threonine           5.9         22           2
 V valine              9.6         36           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   class I alcohol dehydrogenase, alpha subunit 
ADH1B                 0.944   class I alcohol dehydrogenase, beta subunit 
ADH1C                 0.935   class I alcohol dehydrogenase, gamma subunit 
ADH7                  0.711   class IV alcohol dehydrogenase, mu or sigma subunit ...
ADH5                  0.638   class III alcohol dehydrogenase, chi subunit 
ADH6                  0.625   class V alcohol dehydrogenase isoform 1 
ADH6                  0.617   class V alcohol dehydrogenase isoform 2 
ADH4                  0.595   class II alcohol dehydrogenase, pi subunit 
SORD                  0.102   sorbitol dehydrogenase 
CRYZ                  0.049   crystallin, zeta isoform a 
CRYZ                  0.049   crystallin, zeta isoform a 
MECR                  0.045   trans-2-enoyl-CoA reductase, mitochondrial isoform a...
CRYZ                  0.040   crystallin, zeta isoform b 
VAT1                  0.033   vesicle amine transport protein 1 
MECR                  0.027   trans-2-enoyl-CoA reductase, mitochondrial isoform b...
ZADH2                 0.025   zinc binding alcohol dehydrogenase domain containing...
VAT1L                 0.020   vesicle amine transport protein 1 homolog (T. califo...
FASN                  0.019   fatty acid synthase 
TP53I3                0.016   tumor protein p53 inducible protein 3 
TP53I3                0.016   tumor protein p53 inducible protein 3 
CRYZL1                0.011   crystallin, zeta-like 1 
PTGR1                 0.007   prostaglandin reductase 1 isoform 1 
PTGR1                 0.007   prostaglandin reductase 1 isoform 1 
PTGR1                 0.007   prostaglandin reductase 1 isoform 2 
GALNTL6               0.007   N-acetylgalactosaminyltransferase-like 6 
MUC16                 0.005   mucin 16 
NUPL1                 0.005   nucleoporin like 1 isoform b 
NUPL1                 0.005   nucleoporin like 1 isoform a 
TRMT61B               0.005   tRNA methyltransferase 61 homolog B 
TDRD6                 0.005   tudor domain containing 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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