Guide to the Human Genome
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Name: VAT1L Sequence: fasta or formatted (419aa) NCBI GI: 24308257
Description:

vesicle amine transport protein 1 homolog (T. californica)-like

Referenced in:

Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         32           3
 C cysteine            1.4          6           1
 D aspartate           5.0         21           2
 E glutamate           9.8         41           4
 F phenylalanine       4.5         19           2
 G glycine             9.8         41           4
 H histidine           1.4          6           1
 I isoleucine          4.8         20           1
 K lysine              7.2         30           2
 L leucine             8.4         35           2
 M methionine          3.3         14           1
 N asparagine          4.5         19           1
 P proline             4.1         17           2
 Q glutamine           2.9         12           1
 R arginine            3.6         15           1
 S serine              5.3         22           2
 T threonine           4.1         17           1
 V valine              9.3         39           2
 W tryptophan          1.0          4           2
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vesicle amine transport protein 1 homolog (T. califo... 
VAT1                  0.358   vesicle amine transport protein 1 
CRYZ                  0.159   crystallin, zeta isoform a 
CRYZ                  0.159   crystallin, zeta isoform a 
TP53I3                0.129   tumor protein p53 inducible protein 3 
TP53I3                0.129   tumor protein p53 inducible protein 3 
CRYZ                  0.117   crystallin, zeta isoform b 
ZADH2                 0.071   zinc binding alcohol dehydrogenase domain containing...
MECR                  0.064   trans-2-enoyl-CoA reductase, mitochondrial isoform a...
CRYZ                  0.062   crystallin, zeta isoform c 
MECR                  0.058   trans-2-enoyl-CoA reductase, mitochondrial isoform b...
FASN                  0.055   fatty acid synthase 
RTN4IP1               0.036   reticulon 4 interacting protein 1 precursor 
CRYZL1                0.036   crystallin, zeta-like 1 
SORD                  0.028   sorbitol dehydrogenase 
ADH1B                 0.022   class I alcohol dehydrogenase, beta subunit 
ADH1C                 0.021   class I alcohol dehydrogenase, gamma subunit 
ADH1A                 0.018   class I alcohol dehydrogenase, alpha subunit 
ADH7                  0.017   class IV alcohol dehydrogenase, mu or sigma subunit ...
RAD51L3               0.010   RAD51-like 3 isoform 6 
ADH4                  0.010   class II alcohol dehydrogenase, pi subunit 
NPHP1                 0.010   nephrocystin 1 isoform 4 
ADH6                  0.010   class V alcohol dehydrogenase isoform 1 
ADH6                  0.010   class V alcohol dehydrogenase isoform 2 
EIF5B                 0.009   eukaryotic translation initiation factor 5B 
FREM2                 0.009   FRAS1-related extracellular matrix protein 2 precurs...
ADH5                  0.007   class III alcohol dehydrogenase, chi subunit 
CHD5                  0.007   chromodomain helicase DNA binding protein 5 
FAM9A                 0.006   family with sequence similarity 9, member A 
PRM3                  0.006   protamine 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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