Guide to the Human Genome
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Name: PTGR1 Sequence: fasta or formatted (329aa) NCBI GI: 226059159
Description:

prostaglandin reductase 1 isoform 1

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes

Other entries for this name:
alt prot [301aa] prostaglandin reductase 1 isoform 2
alt mRNA [329aa] prostaglandin reductase 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         25           3
 C cysteine            1.2          4           1
 D aspartate           4.3         14           1
 E glutamate           6.7         22           2
 F phenylalanine       3.6         12           1
 G glycine            10.6         35           2
 H histidine           0.6          2           1
 I isoleucine          4.6         15           2
 K lysine              9.4         31           2
 L leucine            10.0         33           2
 M methionine          3.3         11           2
 N asparagine          3.0         10           1
 P proline             5.2         17           3
 Q glutamine           2.7          9           2
 R arginine            2.4          8           1
 S serine              3.6         12           1
 T threonine           6.4         21           2
 V valine              9.4         31           2
 W tryptophan          1.5          5           1
 Y tyrosine            3.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prostaglandin reductase 1 isoform 1 
PTGR1                 1.000   prostaglandin reductase 1 isoform 1 
PTGR1                 0.890   prostaglandin reductase 1 isoform 2 
PTGR2                 0.279   prostaglandin reductase 2 
PTGR2                 0.279   prostaglandin reductase 2 
PTGR2                 0.279   prostaglandin reductase 2 
ZADH2                 0.118   zinc binding alcohol dehydrogenase domain containing...
CRYZ                  0.067   crystallin, zeta isoform a 
CRYZ                  0.067   crystallin, zeta isoform a 
TP53I3                0.055   tumor protein p53 inducible protein 3 
TP53I3                0.055   tumor protein p53 inducible protein 3 
CRYZ                  0.055   crystallin, zeta isoform b 
MECR                  0.052   trans-2-enoyl-CoA reductase, mitochondrial isoform a...
CRYZ                  0.050   crystallin, zeta isoform c 
RTN4IP1               0.049   reticulon 4 interacting protein 1 precursor 
MECR                  0.047   trans-2-enoyl-CoA reductase, mitochondrial isoform b...
VAT1                  0.042   vesicle amine transport protein 1 
FASN                  0.038   fatty acid synthase 
CRYZL1                0.016   crystallin, zeta-like 1 
ADH1C                 0.009   class I alcohol dehydrogenase, gamma subunit 
AOC3                  0.009   amine oxidase, copper containing 3 precursor 
ADH1A                 0.008   class I alcohol dehydrogenase, alpha subunit 
ADH1B                 0.008   class I alcohol dehydrogenase, beta subunit 
C11orf41              0.008   hypothetical protein LOC25758 
CASZ1                 0.006   castor homolog 1, zinc finger isoform a 
CASZ1                 0.006   castor homolog 1, zinc finger isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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