Guide to the Human Genome
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Name: E2F5 Sequence: fasta or formatted (185aa) NCBI GI: 134142813
Description:

E2F transcription factor 5 isoform 3

Referenced in:

E2F Pathways

Other entries for this name:
alt prot [345aa] E2F transcription factor 5 isoform 2
alt prot [346aa] E2F transcription factor 5 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          7           1
 C cysteine            1.6          3           1
 D aspartate           8.6         16           2
 E glutamate           4.3          8           1
 F phenylalanine       3.2          6           1
 G glycine             4.3          8           1
 H histidine           2.2          4           1
 I isoleucine          6.5         12           2
 K lysine              3.2          6           2
 L leucine             9.2         17           2
 M methionine          2.2          4           1
 N asparagine          6.5         12           2
 P proline             8.6         16           3
 Q glutamine           7.6         14           2
 R arginine            1.6          3           1
 S serine             13.0         24           4
 T threonine           5.4         10           1
 V valine              5.9         11           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   E2F transcription factor 5 isoform 3 
E2F5                  1.000   E2F transcription factor 5 isoform 1 
E2F5                  0.983   E2F transcription factor 5 isoform 2 
E2F4                  0.378   E2F transcription factor 4 
E2F2                  0.135   E2F transcription factor 2 
E2F3                  0.100   E2F transcription factor 3 
E2F1                  0.089   E2F transcription factor 1 
E2F6                  0.069   E2F transcription factor 6 
LOC728888             0.023   PREDICTED: similar to acyl-CoA synthetase medium-ch...
C11orf24              0.023   hypothetical protein LOC53838 
BAI1                  0.020   brain-specific angiogenesis inhibitor 1 precursor [...
ZCCHC14               0.020   zinc finger, CCHC domain containing 14 
SEC24B                0.020   SEC24 (S. cerevisiae) homolog B isoform b 
SEC24B                0.020   SEC24 (S. cerevisiae) homolog B isoform a 
LOC647546             0.017   PREDICTED: hypothetical protein 
EP400                 0.017   E1A binding protein p400 
ANK3                  0.017   ankyrin 3 isoform 1 
SRCAP                 0.017   Snf2-related CBP activator protein 
ZNF341                0.017   zinc finger protein 341 
PPP2R5B               0.017   beta isoform of regulatory subunit B56, protein phosp...
KIAA1109              0.017   fragile site-associated protein 
AHNAK2                0.014   AHNAK nucleoprotein 2 
ANKRD17               0.014   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.014   ankyrin repeat domain protein 17 isoform b 
MDC1                  0.014   mediator of DNA-damage checkpoint 1 
ARID1A                0.014   AT rich interactive domain 1A isoform a 
HEG1                  0.014   HEG homolog 1 
ARID5B                0.014   AT rich interactive domain 5B (MRF1-like) 
DCHS1                 0.014   dachsous 1 precursor 
ZYX                   0.014   zyxin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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