Guide to the Human Genome
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Name: SLC16A13 Sequence: fasta or formatted (426aa) NCBI GI: 42475555
Description:

monocarboxylate transporter 13

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         47           2
 C cysteine            1.2          5           1
 D aspartate           2.6         11           1
 E glutamate           2.6         11           2
 F phenylalanine       6.6         28           2
 G glycine            10.3         44           2
 H histidine           1.9          8           2
 I isoleucine          3.1         13           1
 K lysine              0.7          3           1
 L leucine            17.4         74           3
 M methionine          1.2          5           1
 N asparagine          0.5          2           1
 P proline             6.3         27           2
 Q glutamine           2.3         10           2
 R arginine            4.0         17           3
 S serine              8.7         37           2
 T threonine           6.8         29           3
 V valine              8.5         36           3
 W tryptophan          2.1          9           1
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   monocarboxylate transporter 13 
SLC16A11              0.413   solute carrier family 16, member 11 
SLC16A12              0.271   solute carrier family 16 (monocarboxylic acid trans...
SLC16A8               0.259   solute carrier family 16, member 8 
SLC16A7               0.259   solute carrier family 16, member 7 
SLC16A3               0.258   solute carrier family 16, member 3 
SLC16A3               0.258   solute carrier family 16, member 3 
SLC16A3               0.258   solute carrier family 16, member 3 
SLC16A1               0.220   solute carrier family 16, member 1 
SLC16A5               0.203   solute carrier family 16, member 5 
SLC16A6               0.193   solute carrier family 16, member 6 
SLC16A10              0.186   solute carrier family 16, member 10 
SLC16A2               0.167   solute carrier family 16, member 2 
LOC100133772          0.154   PREDICTED: similar to solute carrier family 16, mem...
SLC16A9               0.145   solute carrier family 16 (monocarboxylic acid transp...
SLC16A14              0.139   solute carrier family 16 (monocarboxylic acid transp...
SLC16A4               0.129   solute carrier family 16, member 4 
SLC18A2               0.018   solute carrier family 18 (vesicular monoamine), memb...
SLC37A4               0.017   solute carrier family 37 (glucose-6-phosphate transpo...
SLC22A17              0.012   solute carrier family 22, member 17 isoform b 
SLC17A9               0.012   vesicular nucleotide transporter SLC17A9 
MFSD9                 0.012   major facilitator superfamily domain containing 9 [...
GPR172B               0.012   G protein-coupled receptor 172B 
GPR172B               0.012   G protein-coupled receptor 172B 
GPAT2                 0.011   glycerol-3-phosphate acyltransferase 2, mitochondri...
SLC2A2                0.010   solute carrier family 2 (facilitated glucose transpor...
SLC30A3               0.010   solute carrier family 30 (zinc transporter), member ...
C6orf192              0.010   hypothetical protein LOC116843 
SLC22A17              0.009   solute carrier family 22, member 17 isoform a 
SVOP                  0.009   SV2 related protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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