Guide to the Human Genome
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Name: C6orf192 Sequence: fasta or formatted (456aa) NCBI GI: 16445357
Description:

hypothetical protein LOC116843

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         36           3
 C cysteine            1.5          7           1
 D aspartate           2.0          9           2
 E glutamate           5.0         23           3
 F phenylalanine       7.7         35           2
 G glycine            11.2         51           2
 H histidine           0.9          4           1
 I isoleucine          6.1         28           2
 K lysine              3.1         14           2
 L leucine            15.4         70           2
 M methionine          3.7         17           2
 N asparagine          2.9         13           2
 P proline             5.9         27           2
 Q glutamine           1.1          5           1
 R arginine            2.2         10           2
 S serine              8.8         40           3
 T threonine           3.3         15           2
 V valine              7.2         33           2
 W tryptophan          1.5          7           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC116843 
SLC18A1               0.092   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.092   solute carrier family 18 (vesicular monoamine), membe...
SLC18A2               0.085   solute carrier family 18 (vesicular monoamine), memb...
SLC18A1               0.070   solute carrier family 18 (vesicular monoamine), mem...
SLC18A3               0.070   vesicular acetylcholine transporter 
SLC18A1               0.068   solute carrier family 18 (vesicular monoamine), mem...
SLC22A18              0.040   tumor suppressing subtransferable candidate 5 [Homo...
SLC22A18              0.040   tumor suppressing subtransferable candidate 5 [Homo...
MFSD9                 0.037   major facilitator superfamily domain containing 9 [...
SLC16A11              0.036   solute carrier family 16, member 11 
SLC17A4               0.025   solute carrier family 17 (sodium phosphate), member 4...
SLC37A4               0.016   solute carrier family 37 (glucose-6-phosphate transpo...
SLC37A1               0.016   solute carrier family 37 member 1 
SLC16A9               0.015   solute carrier family 16 (monocarboxylic acid transp...
SLC16A10              0.014   solute carrier family 16, member 10 
SLC17A2               0.014   solute carrier family 17 (sodium phosphate), member 2...
SLC16A2               0.014   solute carrier family 16, member 2 
SLC17A6               0.014   solute carrier family 17 (sodium-dependent inorganic ...
SLC37A3               0.014   solute carrier family 37 (glycerol-3-phosphate trans...
SLC37A3               0.014   solute carrier family 37 (glycerol-3-phosphate trans...
MFSD8                 0.010   major facilitator superfamily domain containing 8 [H...
MFSD6                 0.010   major facilitator superfamily domain containing 6 [...
SLC17A3               0.009   solute carrier family 17 (sodium phosphate), member...
MFSD1                 0.009   major facilitator superfamily domain containing 1 [H...
SLC37A2               0.009   solute carrier family 37 (glycerol-3-phosphate tran...
SLC37A2               0.009   solute carrier family 37 (glycerol-3-phosphate trans...
SLC16A13              0.009   monocarboxylate transporter 13 
SPNS1                 0.009   spinster homolog 1 isoform 3 
SPNS1                 0.009   spinster homolog 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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