Guide to the Human Genome
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Name: SLC16A4 Sequence: fasta or formatted (487aa) NCBI GI: 4759114
Description:

solute carrier family 16, member 4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         35           2
 C cysteine            1.8          9           1
 D aspartate           2.9         14           1
 E glutamate           3.7         18           2
 F phenylalanine       7.6         37           3
 G glycine             7.6         37           2
 H histidine           1.8          9           1
 I isoleucine          7.6         37           2
 K lysine              4.7         23           2
 L leucine            12.5         61           3
 M methionine          2.3         11           1
 N asparagine          3.3         16           2
 P proline             3.7         18           2
 Q glutamine           2.5         12           1
 R arginine            2.5         12           1
 S serine              9.0         44           2
 T threonine           7.4         36           2
 V valine              5.7         28           2
 W tryptophan          2.3         11           1
 Y tyrosine            3.9         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 16, member 4 
SLC16A12              0.201   solute carrier family 16 (monocarboxylic acid trans...
SLC16A14              0.182   solute carrier family 16 (monocarboxylic acid transp...
SLC16A9               0.173   solute carrier family 16 (monocarboxylic acid transp...
SLC16A6               0.168   solute carrier family 16, member 6 
SLC16A7               0.158   solute carrier family 16, member 7 
SLC16A1               0.139   solute carrier family 16, member 1 
SLC16A8               0.130   solute carrier family 16, member 8 
SLC16A13              0.111   monocarboxylate transporter 13 
SLC16A11              0.093   solute carrier family 16, member 11 
SLC16A3               0.087   solute carrier family 16, member 3 
SLC16A3               0.087   solute carrier family 16, member 3 
SLC16A3               0.087   solute carrier family 16, member 3 
SLC16A5               0.086   solute carrier family 16, member 5 
SLC16A10              0.070   solute carrier family 16, member 10 
SLC16A2               0.063   solute carrier family 16, member 2 
LOC100133772          0.055   PREDICTED: similar to solute carrier family 16, mem...
SLC37A4               0.013   solute carrier family 37 (glucose-6-phosphate transpo...
MFSD9                 0.013   major facilitator superfamily domain containing 9 [...
MFSD10                0.010   major facilitator superfamily domain containing 10 ...
MFSD10                0.010   major facilitator superfamily domain containing 10 ...
SLC22A18              0.008   tumor suppressing subtransferable candidate 5 [Homo...
SLC22A18              0.008   tumor suppressing subtransferable candidate 5 [Homo...
OR4K5                 0.007   olfactory receptor, family 4, subfamily K, member 5 ...
OR5B2                 0.006   olfactory receptor, family 5, subfamily B, member 2 ...
TTLL6                 0.006   tubulin tyrosine ligase-like family, member 6 isofo...
TTLL6                 0.006   tubulin tyrosine ligase-like family, member 6 isofo...
OR5A2                 0.006   olfactory receptor, family 5, subfamily A, member 2 ...
MFSD7                 0.006   major facilitator superfamily domain containing 7 [H...
SLC7A7                0.005   solute carrier family 7 member 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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