Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC22A17 Sequence: fasta or formatted (538aa) NCBI GI: 21361834
Description:

solute carrier family 22, member 17 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [520aa] solute carrier family 22, member 17 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         57           3
 C cysteine            3.0         16           1
 D aspartate           3.3         18           1
 E glutamate           3.3         18           2
 F phenylalanine       5.0         27           1
 G glycine            10.0         54           4
 H histidine           2.2         12           1
 I isoleucine          4.5         24           1
 K lysine              1.1          6           1
 L leucine            16.9         91           3
 M methionine          1.7          9           1
 N asparagine          2.8         15           1
 P proline             6.5         35           3
 Q glutamine           3.3         18           2
 R arginine            5.6         30           2
 S serine              6.1         33           2
 T threonine           4.6         25           2
 V valine              5.8         31           2
 W tryptophan          1.9         10           1
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 22, member 17 isoform a 
SLC22A17              0.946   solute carrier family 22, member 17 isoform b 
LOC146429             0.230   PREDICTED: hypothetical protein LOC146429 isoform 1...
LOC146429             0.227   PREDICTED: hypothetical protein LOC146429 isoform 6...
SLC22A23              0.222   solute carrier family 22, member 23 isoform a [Homo...
SLC22A23              0.177   solute carrier family 22, member 23 isoform b 
LOC146429             0.141   PREDICTED: hypothetical protein LOC146429 
SLC22A3               0.106   solute carrier family 22 member 3 
SLC22A13              0.098   solute carrier family 22 (organic anion transporter...
SLC22A8               0.089   solute carrier family 22 member 8 
SLC22A1               0.088   solute carrier family 22 member 1 isoform a 
SLC22A7               0.088   solute carrier family 22 member 7 isoform b 
SLC22A7               0.086   solute carrier family 22 member 7 isoform a 
SLC22A6               0.086   solute carrier family 22 member 6 isoform b 
SLC22A2               0.086   solute carrier family 22 member 2 
SLC22A12              0.085   urate anion exchanger 1 isoform a 
SLC22A6               0.085   solute carrier family 22 member 6 isoform a 
SLC22A9               0.083   solute carrier family 22 (organic anion/cation trans...
SLC22A25              0.080   putative UST1-like organic anion transporter 
SLC22A20              0.078   solute carrier family 22, member 20 
SLC22A24              0.076   solute carrier family 22, member 24 
SLC22A10              0.075   solute carrier family 22, member 10 
SLC22A6               0.070   solute carrier family 22 member 6 isoform d 
SLC22A6               0.070   solute carrier family 22 member 6 isoform c 
SLC22A16              0.069   solute carrier family 22, member 16 
SLC22A11              0.068   solute carrier family 22 member 11 
SLC22A1               0.068   solute carrier family 22 member 1 isoform b 
SLC22A5               0.068   solute carrier family 22 member 5 
SLC22A15              0.067   solute carrier family 22, member 15 
SLC22A4               0.056   solute carrier family 22 member 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press