Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC16A11 Sequence: fasta or formatted (471aa) NCBI GI: 23503293
Description:

solute carrier family 16, member 11

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         65           4
 C cysteine            1.1          5           1
 D aspartate           2.8         13           1
 E glutamate           1.3          6           2
 F phenylalanine       4.7         22           1
 G glycine            14.6         69           3
 H histidine           1.5          7           1
 I isoleucine          1.5          7           1
 K lysine              0.2          1           1
 L leucine            18.0         85           4
 M methionine          1.5          7           2
 N asparagine          0.4          2           1
 P proline             9.1         43           3
 Q glutamine           2.1         10           2
 R arginine            4.5         21           3
 S serine              6.8         32           2
 T threonine           4.5         21           2
 V valine              7.6         36           2
 W tryptophan          2.1         10           1
 Y tyrosine            1.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 16, member 11 
SLC16A13              0.368   monocarboxylate transporter 13 
SLC16A8               0.251   solute carrier family 16, member 8 
SLC16A3               0.244   solute carrier family 16, member 3 
SLC16A3               0.244   solute carrier family 16, member 3 
SLC16A3               0.244   solute carrier family 16, member 3 
SLC16A7               0.227   solute carrier family 16, member 7 
SLC16A12              0.221   solute carrier family 16 (monocarboxylic acid trans...
SLC16A5               0.190   solute carrier family 16, member 5 
SLC16A1               0.180   solute carrier family 16, member 1 
SLC16A10              0.165   solute carrier family 16, member 10 
LOC100133772          0.145   PREDICTED: similar to solute carrier family 16, mem...
SLC16A6               0.143   solute carrier family 16, member 6 
SLC16A2               0.140   solute carrier family 16, member 2 
SLC16A14              0.129   solute carrier family 16 (monocarboxylic acid transp...
SLC16A9               0.115   solute carrier family 16 (monocarboxylic acid transp...
SLC16A4               0.097   solute carrier family 16, member 4 
C6orf192              0.035   hypothetical protein LOC116843 
SLC37A4               0.022   solute carrier family 37 (glucose-6-phosphate transpo...
SLC17A9               0.018   vesicular nucleotide transporter SLC17A9 
ELN                   0.013   elastin isoform e precursor 
ELN                   0.013   elastin isoform d precursor 
ELN                   0.013   elastin isoform c precursor 
ELN                   0.013   elastin isoform b precursor 
ELN                   0.013   elastin isoform a precursor 
LOC100129203          0.012   PREDICTED: similar to mCG50504 
HIAT1                 0.012   hippocampus abundant transcript 1 
SYNJ1                 0.011   synaptojanin 1 isoform d 
COL8A1                0.011   alpha 1 type VIII collagen precursor 
COL8A1                0.011   alpha 1 type VIII collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press