Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC16A5 Sequence: fasta or formatted (505aa) NCBI GI: 4759116
Description:

solute carrier family 16, member 5

Referenced in:

Kidney
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         49           2
 C cysteine            3.0         15           2
 D aspartate           2.2         11           1
 E glutamate           2.8         14           1
 F phenylalanine       6.9         35           2
 G glycine             8.9         45           2
 H histidine           1.8          9           1
 I isoleucine          4.8         24           2
 K lysine              2.0         10           2
 L leucine            14.3         72           3
 M methionine          3.2         16           1
 N asparagine          2.4         12           2
 P proline             5.7         29           5
 Q glutamine           4.0         20           2
 R arginine            4.2         21           3
 S serine              8.1         41           2
 T threonine           4.8         24           1
 V valine              6.5         33           2
 W tryptophan          2.6         13           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 16, member 5 
LOC100133772          0.863   PREDICTED: similar to solute carrier family 16, mem...
SLC16A3               0.292   solute carrier family 16, member 3 
SLC16A3               0.292   solute carrier family 16, member 3 
SLC16A3               0.292   solute carrier family 16, member 3 
SLC16A8               0.284   solute carrier family 16, member 8 
SLC16A7               0.265   solute carrier family 16, member 7 
SLC16A1               0.219   solute carrier family 16, member 1 
SLC16A12              0.188   solute carrier family 16 (monocarboxylic acid trans...
SLC16A11              0.175   solute carrier family 16, member 11 
SLC16A13              0.166   monocarboxylate transporter 13 
SLC16A14              0.139   solute carrier family 16 (monocarboxylic acid transp...
SLC16A10              0.127   solute carrier family 16, member 10 
SLC16A6               0.124   solute carrier family 16, member 6 
SLC16A2               0.119   solute carrier family 16, member 2 
SLC16A9               0.107   solute carrier family 16 (monocarboxylic acid transp...
SLC16A4               0.082   solute carrier family 16, member 4 
SPNS3                 0.015   spinster homolog 3 
SLC18A1               0.013   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.013   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.013   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.013   solute carrier family 18 (vesicular monoamine), membe...
SLC17A4               0.012   solute carrier family 17 (sodium phosphate), member 4...
SLC17A3               0.010   solute carrier family 17 (sodium phosphate), member...
SLC17A3               0.010   solute carrier family 17 (sodium phosphate), member...
MFSD1                 0.010   major facilitator superfamily domain containing 1 [H...
SLC45A1               0.008   DNB5 
SLC18A2               0.008   solute carrier family 18 (vesicular monoamine), memb...
GOLT1A                0.008   golgi transport 1 homolog A 
OR52D1                0.007   olfactory receptor, family 52, subfamily D, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press