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Search of human proteins with 41872646
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41872646 cullin 7 [Homo sapiens]
(1698 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41872646 cullin 7 [Homo sapiens] 3421 0.0
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 1336 0.0
gi|126032348 hect domain and RLD 2 [Homo sapiens] 99 5e-20
gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap... 98 8e-20
gi|157738609 HECT domain containing 3 [Homo sapiens] 94 1e-18
gi|32307161 cullin 1 [Homo sapiens] 55 4e-07
gi|150170706 anaphase promoting complex subunit 10 [Homo sapiens] 46 3e-04
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 36 0.28
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 36 0.28
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof... 36 0.28
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof... 36 0.28
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof... 36 0.28
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof... 36 0.28
gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isof... 36 0.28
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof... 36 0.28
gi|116805342 human immunodeficiency virus type I enhancer bindin... 35 0.48
gi|4504191 mutS homolog 6 [Homo sapiens] 35 0.62
gi|41281907 StAR-related lipid transfer (START) domain containin... 35 0.62
gi|16445031 StAR-related lipid transfer (START) domain containin... 35 0.62
gi|41281898 StAR-related lipid transfer (START) domain containin... 35 0.62
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 34 1.1
gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens] 33 1.8
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 33 1.8
gi|66472382 nischarin [Homo sapiens] 33 1.8
gi|15529978 zinc finger protein 622 [Homo sapiens] 33 1.8
gi|21735415 centromere protein B [Homo sapiens] 33 2.4
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 33 2.4
gi|28558975 mediator complex subunit 17 [Homo sapiens] 33 2.4
gi|28559080 spermine oxidase isoform 4 [Homo sapiens] 33 3.1
gi|28559076 spermine oxidase isoform 2 [Homo sapiens] 33 3.1
>gi|41872646 cullin 7 [Homo sapiens]
Length = 1698
Score = 3421 bits (8870), Expect = 0.0
Identities = 1698/1698 (100%), Positives = 1698/1698 (100%)
Query: 1 MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDEGDGGSGQVDC 60
MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDEGDGGSGQVDC
Sbjct: 1 MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDEGDGGSGQVDC 60
Query: 61 KAEHILLWMSKDEIYANCHKMLGEDGQVIGPSQESAGEVGALDKSVLEEMETDVKSLIQR 120
KAEHILLWMSKDEIYANCHKMLGEDGQVIGPSQESAGEVGALDKSVLEEMETDVKSLIQR
Sbjct: 61 KAEHILLWMSKDEIYANCHKMLGEDGQVIGPSQESAGEVGALDKSVLEEMETDVKSLIQR 120
Query: 121 ALRQLEECVGTIPPAPLLHTVHVLSAYASIEPLTGVFKDPRVLDLLMHMLSSPDYQIRWS 180
ALRQLEECVGTIPPAPLLHTVHVLSAYASIEPLTGVFKDPRVLDLLMHMLSSPDYQIRWS
Sbjct: 121 ALRQLEECVGTIPPAPLLHTVHVLSAYASIEPLTGVFKDPRVLDLLMHMLSSPDYQIRWS 180
Query: 181 AGRMIQALSSHDAGTRTQILLSLSQQEAIEKHLDFDSRCALLALFAQATLSEHPMSFEGI 240
AGRMIQALSSHDAGTRTQILLSLSQQEAIEKHLDFDSRCALLALFAQATLSEHPMSFEGI
Sbjct: 181 AGRMIQALSSHDAGTRTQILLSLSQQEAIEKHLDFDSRCALLALFAQATLSEHPMSFEGI 240
Query: 241 QLPQVPGRVLFSLVKRYLHVTSLLDQLNDSAAEPGAQNTSAPEELSGERGQLELEFSMAM 300
QLPQVPGRVLFSLVKRYLHVTSLLDQLNDSAAEPGAQNTSAPEELSGERGQLELEFSMAM
Sbjct: 241 QLPQVPGRVLFSLVKRYLHVTSLLDQLNDSAAEPGAQNTSAPEELSGERGQLELEFSMAM 300
Query: 301 GTLISELVQAMRWDQASDRPRSSARSPGSIFQPQLADVSPGLPAAQAQPSFRRSRRFRPR 360
GTLISELVQAMRWDQASDRPRSSARSPGSIFQPQLADVSPGLPAAQAQPSFRRSRRFRPR
Sbjct: 301 GTLISELVQAMRWDQASDRPRSSARSPGSIFQPQLADVSPGLPAAQAQPSFRRSRRFRPR 360
Query: 361 SEFASGNTYALYVRDTLQPGMRVRMLDDYEEISAGDEGEFRQSNNGVPPVQVFWESTGRT 420
SEFASGNTYALYVRDTLQPGMRVRMLDDYEEISAGDEGEFRQSNNGVPPVQVFWESTGRT
Sbjct: 361 SEFASGNTYALYVRDTLQPGMRVRMLDDYEEISAGDEGEFRQSNNGVPPVQVFWESTGRT 420
Query: 421 YWVHWHMLEILGFEEDIEDMVEADEYQGAVASRVLGRALPAWRWRPMTELYAVPYVLPED 480
YWVHWHMLEILGFEEDIEDMVEADEYQGAVASRVLGRALPAWRWRPMTELYAVPYVLPED
Sbjct: 421 YWVHWHMLEILGFEEDIEDMVEADEYQGAVASRVLGRALPAWRWRPMTELYAVPYVLPED 480
Query: 481 EDTEECEHLTLAEWWELLFFIKKLDGPDHQEVLQILQENLDGEILDDEILAELAVPIELA 540
EDTEECEHLTLAEWWELLFFIKKLDGPDHQEVLQILQENLDGEILDDEILAELAVPIELA
Sbjct: 481 EDTEECEHLTLAEWWELLFFIKKLDGPDHQEVLQILQENLDGEILDDEILAELAVPIELA 540
Query: 541 QDLLLTLPQRLNDSALRDLINCHVYKKYGPEALAGNQAYPSLLEAQEDVLLLDAQAQAKD 600
QDLLLTLPQRLNDSALRDLINCHVYKKYGPEALAGNQAYPSLLEAQEDVLLLDAQAQAKD
Sbjct: 541 QDLLLTLPQRLNDSALRDLINCHVYKKYGPEALAGNQAYPSLLEAQEDVLLLDAQAQAKD 600
Query: 601 SEDAAKVEAKEPPSQSPNTPLQRLVEGYGPAGKILLDLEQALSSEGTQENKVKPLLLQLQ 660
SEDAAKVEAKEPPSQSPNTPLQRLVEGYGPAGKILLDLEQALSSEGTQENKVKPLLLQLQ
Sbjct: 601 SEDAAKVEAKEPPSQSPNTPLQRLVEGYGPAGKILLDLEQALSSEGTQENKVKPLLLQLQ 660
Query: 661 RQPQPFLALMQSLDTPETNRTLHLTVLRILKQLVDFPEALLLPWHEAVDACMACLRSPNT 720
RQPQPFLALMQSLDTPETNRTLHLTVLRILKQLVDFPEALLLPWHEAVDACMACLRSPNT
Sbjct: 661 RQPQPFLALMQSLDTPETNRTLHLTVLRILKQLVDFPEALLLPWHEAVDACMACLRSPNT 720
Query: 721 DREVLQELIFFLHRLTSVSRDYAVVLNQLGARDAISKALEKHLGKLELAQELRDMVFKCE 780
DREVLQELIFFLHRLTSVSRDYAVVLNQLGARDAISKALEKHLGKLELAQELRDMVFKCE
Sbjct: 721 DREVLQELIFFLHRLTSVSRDYAVVLNQLGARDAISKALEKHLGKLELAQELRDMVFKCE 780
Query: 781 KHAHLYRKLITNILGGCIQMVLGQIEDHRRTHQPINIPFFDVFLRYLCQGSSVEVKEDKC 840
KHAHLYRKLITNILGGCIQMVLGQIEDHRRTHQPINIPFFDVFLRYLCQGSSVEVKEDKC
Sbjct: 781 KHAHLYRKLITNILGGCIQMVLGQIEDHRRTHQPINIPFFDVFLRYLCQGSSVEVKEDKC 840
Query: 841 WEKVEVSSNPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSSY 900
WEKVEVSSNPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSSY
Sbjct: 841 WEKVEVSSNPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSSY 900
Query: 901 MPARVVVCGGDSTSSLHTELNSVNVMPSASRVILLENLTRFWPIIQIRIKRCQQGGIDTR 960
MPARVVVCGGDSTSSLHTELNSVNVMPSASRVILLENLTRFWPIIQIRIKRCQQGGIDTR
Sbjct: 901 MPARVVVCGGDSTSSLHTELNSVNVMPSASRVILLENLTRFWPIIQIRIKRCQQGGIDTR 960
Query: 961 IRGLEILGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDMAEDRRSLLHLSSRLNGALRQ 1020
IRGLEILGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDMAEDRRSLLHLSSRLNGALRQ
Sbjct: 961 IRGLEILGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDMAEDRRSLLHLSSRLNGALRQ 1020
Query: 1021 EQNFADRFLPDDEAAQALGKTCWEALVSPVVQNITSPDEDGISPLGWLLDQYLECQEAVF 1080
EQNFADRFLPDDEAAQALGKTCWEALVSPVVQNITSPDEDGISPLGWLLDQYLECQEAVF
Sbjct: 1021 EQNFADRFLPDDEAAQALGKTCWEALVSPVVQNITSPDEDGISPLGWLLDQYLECQEAVF 1080
Query: 1081 NPQSRGPAFFSRVRRLTHLLVHVEPCEAPPPVVATPRPKGRNRSHDWSSLATRGLPSSIM 1140
NPQSRGPAFFSRVRRLTHLLVHVEPCEAPPPVVATPRPKGRNRSHDWSSLATRGLPSSIM
Sbjct: 1081 NPQSRGPAFFSRVRRLTHLLVHVEPCEAPPPVVATPRPKGRNRSHDWSSLATRGLPSSIM 1140
Query: 1141 RNLTRCWRAVVEKQVNNFLTSSWRDDDFVPRYCEHFNILQNSSSELFGPRAAFLLALQNG 1200
RNLTRCWRAVVEKQVNNFLTSSWRDDDFVPRYCEHFNILQNSSSELFGPRAAFLLALQNG
Sbjct: 1141 RNLTRCWRAVVEKQVNNFLTSSWRDDDFVPRYCEHFNILQNSSSELFGPRAAFLLALQNG 1200
Query: 1201 CAGALLKLPFLKAAHVSEQFARHIDQQIQGSRIGGAQEMERLAQLQQCLQAVLIFSGLEI 1260
CAGALLKLPFLKAAHVSEQFARHIDQQIQGSRIGGAQEMERLAQLQQCLQAVLIFSGLEI
Sbjct: 1201 CAGALLKLPFLKAAHVSEQFARHIDQQIQGSRIGGAQEMERLAQLQQCLQAVLIFSGLEI 1260
Query: 1261 ATTFEHYYQHYMADRLLGVVSSWLEGAVLEQIGPCFPNRLPQQMLQSLSTSKELQRQFHV 1320
ATTFEHYYQHYMADRLLGVVSSWLEGAVLEQIGPCFPNRLPQQMLQSLSTSKELQRQFHV
Sbjct: 1261 ATTFEHYYQHYMADRLLGVVSSWLEGAVLEQIGPCFPNRLPQQMLQSLSTSKELQRQFHV 1320
Query: 1321 YQLQQLDQELLKLEDTEKKIQVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEEENEDL 1380
YQLQQLDQELLKLEDTEKKIQVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEEENEDL
Sbjct: 1321 YQLQQLDQELLKLEDTEKKIQVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEEENEDL 1380
Query: 1381 YYEGAMPEVSVLVLSRHSWPVASICHTLNPRTCLPSYLRGTLNRYSNFYNKSQSHPALER 1440
YYEGAMPEVSVLVLSRHSWPVASICHTLNPRTCLPSYLRGTLNRYSNFYNKSQSHPALER
Sbjct: 1381 YYEGAMPEVSVLVLSRHSWPVASICHTLNPRTCLPSYLRGTLNRYSNFYNKSQSHPALER 1440
Query: 1441 GSQRRLQWTWLGWAELQFGNQTLHVSTVQMWLLLYLNDLKAVSVESLLAFSGLSADMLNQ 1500
GSQRRLQWTWLGWAELQFGNQTLHVSTVQMWLLLYLNDLKAVSVESLLAFSGLSADMLNQ
Sbjct: 1441 GSQRRLQWTWLGWAELQFGNQTLHVSTVQMWLLLYLNDLKAVSVESLLAFSGLSADMLNQ 1500
Query: 1501 AIGPLTSSRGPLDLHEQKDIPGGVLKIRDGSKEPRSRWDIVRLIPPQTYLQAEGEDGQNL 1560
AIGPLTSSRGPLDLHEQKDIPGGVLKIRDGSKEPRSRWDIVRLIPPQTYLQAEGEDGQNL
Sbjct: 1501 AIGPLTSSRGPLDLHEQKDIPGGVLKIRDGSKEPRSRWDIVRLIPPQTYLQAEGEDGQNL 1560
Query: 1561 EKRRNLLNCLIVRILKAHGDEGLHIDQLVCLVLEAWQKGPCPPRGLVSSLGKGSACSSTD 1620
EKRRNLLNCLIVRILKAHGDEGLHIDQLVCLVLEAWQKGPCPPRGLVSSLGKGSACSSTD
Sbjct: 1561 EKRRNLLNCLIVRILKAHGDEGLHIDQLVCLVLEAWQKGPCPPRGLVSSLGKGSACSSTD 1620
Query: 1621 VLSCILHLLGKGTLRRHDDRPQVLSYAVPVTVMEPHTESLNPGSSGPNPPLTFHTLQIRS 1680
VLSCILHLLGKGTLRRHDDRPQVLSYAVPVTVMEPHTESLNPGSSGPNPPLTFHTLQIRS
Sbjct: 1621 VLSCILHLLGKGTLRRHDDRPQVLSYAVPVTVMEPHTESLNPGSSGPNPPLTFHTLQIRS 1680
Query: 1681 RGVPYASCTATQSFSTFR 1698
RGVPYASCTATQSFSTFR
Sbjct: 1681 RGVPYASCTATQSFSTFR 1698
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 1336 bits (3457), Expect = 0.0
Identities = 677/1065 (63%), Positives = 827/1065 (77%), Gaps = 32/1065 (3%)
Query: 589 VLLLDAQAQAKDSEDAAKVEAKEPPSQ--SPNTPLQRLVEGYGPAGKILLDLEQALSSEG 646
++LL+ ++ S + A +E Q SP ++ LV G P+ ++LLDLE+ L EG
Sbjct: 918 MMLLNRYSEPPGSPERAALETPIIQGQDGSPELLIRSLVGG--PSAELLLDLERVLCREG 975
Query: 647 TQENKVKPLLLQLQRQPQPFLALMQSLDTPETNRTLHLTVLRILKQLVDFPEALLLPWHE 706
+ V+PLL +LQ++ QPFL L+++LD P N+TL L+VLR++ +L+DFPEA++LPWHE
Sbjct: 976 SPGGAVRPLLKRLQQETQPFLLLLRTLDAPGPNKTLLLSVLRVITRLLDFPEAMVLPWHE 1035
Query: 707 AVDACMACLRSPNTDREVLQELIFFLHRLTSVSRDYAVVLNQLGARDAISKALEKHLGKL 766
++ C+ CL P++D E++QEL FLHRL S+ +DYAVVL LGA++ +SK L+KH +L
Sbjct: 1036 VLEPCLNCLSGPSSDSEIVQELTCFLHRLASMHKDYAVVLCCLGAKEILSKVLDKHSAQL 1095
Query: 767 ELAQELRDMVFKCEKHAHLYRKLITNILGGCIQMVLGQIEDHRRTHQPINIPFFDVFLRY 826
L ELRD+V +CEK+A LY L ++IL GCIQMVLGQIEDHRRTHQPINIPFFDVFLR+
Sbjct: 1096 LLGCELRDLVTECEKYAQLYSNLTSSILAGCIQMVLGQIEDHRRTHQPINIPFFDVFLRH 1155
Query: 827 LCQGSSVEVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILI 886
LCQGSSVEVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWESNGS GSHYITLHM RG+L+
Sbjct: 1156 LCQGSSVEVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWESNGSTGSHYITLHMHRGVLV 1215
Query: 887 RQLTLLVASEDSSYMPARVVVCGGDSTSSLHTELNSVNVMPSASRVILLENLTRFWPIIQ 946
RQLTLLVASEDSSYMPARVVV GGDSTS + TELN+VNVMPSASRVILLENL RFWPIIQ
Sbjct: 1216 RQLTLLVASEDSSYMPARVVVFGGDSTSCIGTELNTVNVMPSASRVILLENLNRFWPIIQ 1275
Query: 947 IRIKRCQQGGIDTRIRGLEILGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDMAEDRRS 1006
IRIKRCQQGGIDTR+RG+E+LGPKPTFWP+FREQLCR T LFY +RAQAWS+D+AED R
Sbjct: 1276 IRIKRCQQGGIDTRVRGVEVLGPKPTFWPLFREQLCRRTCLFYTIRAQAWSRDIAEDHRR 1335
Query: 1007 LLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWEALVSPVVQNITSPDEDGISPLG 1066
LL L RLN LR EQNFADRFLPDDEAAQALGKTCWEALVSP+VQNITSPD +G+S LG
Sbjct: 1336 LLQLCPRLNRVLRHEQNFADRFLPDDEAAQALGKTCWEALVSPLVQNITSPDAEGVSALG 1395
Query: 1067 WLLDQYLECQEAVFNPQSRGPAFFSRVRRLTHLLVHVEPCEAPPPVVATPRPKGRN-RSH 1125
WLLDQYLE +E NP SR +F SRVRRL HLLVHVEP P P +T RP +N +
Sbjct: 1396 WLLDQYLEQRETSRNPLSRAASFASRVRRLCHLLVHVEPPPGPSPEPST-RPFSKNSKGR 1454
Query: 1126 DWSSLATRGLPSSIMRNLTRCWRAVVEKQVNNFLTSSWRDDDFVPRYCEHFNILQNSSSE 1185
D S + LPSS +RN+T+CW +VV++QV+ FL ++WR DFVPRYC+ + LQ + SE
Sbjct: 1455 DRSPAPSPVLPSSSLRNITQCWLSVVQEQVSRFLAAAWRAPDFVPRYCKLYEHLQRAGSE 1514
Query: 1186 LFGPRAAFLLALQNGCAGALLKLPFLKAAHVSEQFARHIDQQIQGSRIGGAQEMERLAQL 1245
LFGPRAAF+LAL++G +GALL+ FL AAH+SEQFAR+IDQQIQG IGGA +E L QL
Sbjct: 1515 LFGPRAAFMLALRSGFSGALLQQSFLTAAHMSEQFARYIDQQIQGGLIGGAPGVEMLGQL 1574
Query: 1246 QQCLQAVLIFSGLEIATTFEHYYQHYMADRLLGVVSSWLEGAVLEQIGPCFPNRLPQQML 1305
Q+ L+ +++ SGLE+ATTFEH+YQHYMADRLL SSWLEGAVLEQIG CFPNRLPQ ML
Sbjct: 1575 QRHLEPIMVLSGLELATTFEHFYQHYMADRLLSFGSSWLEGAVLEQIGLCFPNRLPQLML 1634
Query: 1306 QSLSTSKELQRQFHVYQLQQLDQELLKLEDTEKKIQVGLGASGKEHKSEKEEEAGAAAVV 1365
QSLSTS+ELQRQFH++QLQ+LD+ L+ ED E+K + E+EEE
Sbjct: 1635 QSLSTSEELQRQFHLFQLQRLDKLFLEQEDEEEK------------RLEEEEEE------ 1676
Query: 1366 DVAEGEEEEEENEDLYYEGAMPEVSVLVLSRHSWPVASICHTLNPRTCLPSYLRGTLNRY 1425
EEEEE ++L+ E P +S+LVLS WPV+ +C+ +PR CLP+ L+R+
Sbjct: 1677 -----EEEEEAEKELFIEDPSPAISILVLSPRCWPVSPLCYLYHPRKCLPTEFCDALDRF 1731
Query: 1426 SNFYNKSQSHPALERGSQRRLQWTWLGWAELQFGNQTLHVSTVQMWLLLYLNDLKAVSVE 1485
S+FY++SQ+HP L+ G RRLQWTWLG AELQFG Q LHVSTVQMWLLL N + VSVE
Sbjct: 1732 SSFYSQSQNHPVLDMGPHRRLQWTWLGRAELQFGKQILHVSTVQMWLLLKFNQTEEVSVE 1791
Query: 1486 SLLAFSGLSADMLNQAIGPLTSSRGPLDLHEQKDIP-GGVLKIRDGSKEPRSRWDIVRLI 1544
+LL S LS ++L QA+ PLTS GPL LHE +D P GGVL++ + P+ + + LI
Sbjct: 1792 TLLKDSDLSPELLLQALVPLTSGNGPLTLHEGQDFPHGGVLRLHEPG--PQRSGEALWLI 1849
Query: 1545 PPQTYLQAEGEDGQNLEKRRNLLNCLIVRILKAHGDEGLHIDQLVCLVLEAWQKGPCPPR 1604
PPQ YL E ++G+ LE++RNLL+CL+VRILKAHG++GLHIDQLVCLVLEAWQKGP PP
Sbjct: 1850 PPQAYLNVEKDEGRTLEQKRNLLSCLLVRILKAHGEKGLHIDQLVCLVLEAWQKGPNPPG 1909
Query: 1605 GLVSSLGKGSACSSTDVLSCILHLLGKGTLRRHDDRPQVLSYAVP 1649
L ++ G AC+STDVLSCILHLLG+G ++R DDRPQ+L YA P
Sbjct: 1910 TLGHTVAGGVACTSTDVLSCILHLLGQGYVKRRDDRPQILMYAAP 1954
Score = 607 bits (1566), Expect = e-173
Identities = 342/637 (53%), Positives = 434/637 (68%), Gaps = 29/637 (4%)
Query: 1 MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDEGDGGSGQVDC 60
MVGE + VPLGP L AYP+ELIRQR GHDGHPEY IRW +L+ G+ G G +
Sbjct: 1 MVGERHAGDLMVPLGPRLQAYPEELIRQRPGHDGHPEYLIRWSVLKCGEVGK--VGVEEG 58
Query: 61 KAEHILLWMSKDEIYANCHKMLGEDGQVIGPSQESAG-------EVGALDKSVLEEMETD 113
KAEHIL+W+S E+YANC +LGE G E AG + G LD+ + EME D
Sbjct: 59 KAEHILMWLSAPEVYANCPGLLGERALSKGLQHEPAGVSGSFPRDPGGLDEVAMGEMEAD 118
Query: 114 VKSLIQRALRQLEECVGTIPPAPLLHTVHVLSAYASIEPLTGVFKDPRVLDLLMHMLSSP 173
V++L++RA RQL E A +LHT+HVLSAYASI PLTGVF++ LDLLMHML +P
Sbjct: 119 VQALVRRAARQLAESGTPSLTAAVLHTIHVLSAYASIGPLTGVFRETGALDLLMHMLCNP 178
Query: 174 DYQIRWSAGRMIQALSSHDAGTRTQILLSLSQQEAIEKHLDFDSRCALLALFAQATLS-E 232
+ QIR SAG+M+QAL++HDAG+R +LLSLSQQ+ IE+H+DFDSR LL LFA+ T S E
Sbjct: 179 EPQIRRSAGKMLQALAAHDAGSRAHVLLSLSQQDGIEQHMDFDSRYTLLELFAETTSSEE 238
Query: 233 HPMSFEGIQLPQVPGRVLFSLVKRYLHVTSLLDQLNDSAAEPGAQNTSAP-EELSGERGQ 291
H M+FEGI LPQ+PG++LFSLVKRYL VTSLLDQLN S+ E GA + S+P RGQ
Sbjct: 239 HCMAFEGIHLPQIPGKLLFSLVKRYLCVTSLLDQLN-SSPELGAGDQSSPCATREKSRGQ 297
Query: 292 LELEFSMAMGTLISELVQAMRWDQ-ASDRPRSSARSPGSIFQPQLADVSPGLPAAQAQPS 350
ELEFSMA+G LISELV++M W + S++ S R SIFQP ++ S LP P
Sbjct: 298 RELEFSMAVGNLISELVRSMGWARNLSEQGMSPPRPTRSIFQPYISGPSLLLPTIVTTPR 357
Query: 351 FRRSRRFRPRSEFASGNTYALYVRDTLQPGMRVRMLDDYEEISAGDEGEFRQSNNGVPPV 410
R+ FR RSEF+S + Y YV+ TLQPGMRVRMLDDYEEISAGDEGEFRQSNNG+PPV
Sbjct: 358 -RQGWVFRQRSEFSSRSGYGEYVQQTLQPGMRVRMLDDYEEISAGDEGEFRQSNNGIPPV 416
Query: 411 QVFWESTGRTYWVHWHMLEILGFEEDIEDMVEADEYQGAVASRVLGRALPAWRWRPMTEL 470
QVFW+STGRTYWVHWHMLEILG EE ED A +GA A+ VLG A P+W W PM L
Sbjct: 417 QVFWQSTGRTYWVHWHMLEILGPEEATEDKASAAVEKGAGAT-VLGTAFPSWDWNPMDGL 475
Query: 471 YAVPYVLPEDEDTEECEHLTLAEWWELLFFIKKLDGPDHQEVLQILQENLDGEILDDEIL 530
Y +PY+ PE + E +LT AEWWELLFFIKKLD + Q + Q L +NLD E L ++ L
Sbjct: 476 YPLPYLQPEPQKNERVGYLTQAEWWELLFFIKKLDLCEQQPIFQNLWKNLD-ETLGEKAL 534
Query: 531 AELAVPIELAQDLLLTLPQRLNDSALRDLINCHVYKKYG-----PEALAGNQAYPSLLEA 585
E++V +E+A+ LL L R S L DL+N +Y KYG P + + ++ + +
Sbjct: 535 GEISVSVEMAESLLQVLSSRFEGSTLNDLLNSQIYTKYGLLSNEPSSSSTSRNHSCTPDP 594
Query: 586 QEDVLLLDAQAQAKDSE---DAAKVEAKEPPSQSPNT 619
+E +++++A SE ++ K +A+ P +++ T
Sbjct: 595 EE-----ESKSEASFSEEETESLKAKAEAPKTEAEPT 626
>gi|126032348 hect domain and RLD 2 [Homo sapiens]
Length = 4834
Score = 98.6 bits (244), Expect = 5e-20
Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 2/127 (1%)
Query: 842 EKVEVSSNPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSSYM 901
+ + VSS+ ++AS+L D + + W+S+GS G H+I L + +L+ +L ++V DSSYM
Sbjct: 2787 KSLNVSSSVNQASRLIDGS-EPCWQSSGSQGKHWIRLEIFPDVLVHRLKMIVDPADSSYM 2845
Query: 902 PARVVVCGGDSTSSLHTELNSVNVMPSASRVILLENLTRFWPIIQIRIKRCQQGGIDTRI 961
P+ VVV GG+S ++L EL ++N+ PS + V LL + T + I+I IK+C+ GID +I
Sbjct: 2846 PSLVVVSGGNSLNNL-IELKTININPSDTTVPLLNDCTEYHRYIEIAIKQCRSSGIDCKI 2904
Query: 962 RGLEILG 968
GL +LG
Sbjct: 2905 HGLILLG 2911
Score = 63.2 bits (152), Expect = 2e-09
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 354 SRRFRPRSEFASGNTYALYVRDTLQPGMRVRMLDDYEEISAGDEGE-FRQSNNGVPP--V 410
S+ ++ R++F S + YA+YVR+ +Q GM VR YEE+ GD G+ + +G+ V
Sbjct: 2548 SQTYKKRADFLSNDDYAVYVRENIQVGMMVRCCRAYEEVCEGDVGKVIKLDRDGLHDLNV 2607
Query: 411 QVFWESTGRTYWVHWHMLEILGF 433
Q W+ G TYWV + +E++G+
Sbjct: 2608 QCDWQQKGGTYWVRYIHVELIGY 2630
>gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo
sapiens]
Length = 2961
Score = 97.8 bits (242), Expect = 8e-20
Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 839 KCWEKVEVSSNPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDS 898
KC+ +E SSN K+T+ +YW+S+GSA SH+I L M+ +++R L++ VA+ D
Sbjct: 251 KCYAYIETSSNSADIDKMTNGETSSYWQSDGSACSHWIRLKMKPDVVLRHLSIAVAATDQ 310
Query: 899 SYMPARVVVCGGDSTSSLHTELNSVNVMPSAS-RVILLENLTRFWPIIQIRIKRCQQGGI 957
SYMP +V V G + S L E+ V++ + + V LLEN +QI IKRC G
Sbjct: 311 SYMPQQVTVAVGRNASDLQ-EVRDVHIPSNVTGYVTLLENANVSQLYVQINIKRCLSDGC 369
Query: 958 DTRIRGLEILG 968
DTRI GL +G
Sbjct: 370 DTRIHGLRAVG 380
>gi|157738609 HECT domain containing 3 [Homo sapiens]
Length = 861
Score = 93.6 bits (231), Expect = 1e-18
Identities = 52/128 (40%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 842 EKVEVSS--NPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSS 899
E ++VSS S LTD N TYWES+GS H++ L M++G ++++L L V + D +
Sbjct: 245 ESIDVSSYTEEFNVSCLTDSNADTYWESDGSQCQHWVRLTMKKGTIVKKLLLTVDTTDDN 304
Query: 900 YMPARVVVCGGDSTSSLHTELNSVNVMPS-ASRVILLENLTRFWPIIQIRIKRCQQGGID 958
+MP RVVV GG+ + +L+ V++ + V +LE++T PII+IRI C+ GID
Sbjct: 305 FMPKRVVVYGGEGDNL--KKLSDVSIDETLIGDVCVLEDMTVHLPIIEIRIVECRDDGID 362
Query: 959 TRIRGLEI 966
R+RG++I
Sbjct: 363 VRLRGVKI 370
>gi|32307161 cullin 1 [Homo sapiens]
Length = 776
Score = 55.5 bits (132), Expect = 4e-07
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 28/202 (13%)
Query: 1388 EVSVLVLSRHSWPVASICHTLNPRTCLPSYLRGTLNRYSNFYNKSQSHPALERGSQRRLQ 1447
+ S+ VLS SWP C LPS L + R++ FY R S R+L
Sbjct: 534 DFSIQVLSSGSWPFQQSC-----TFALPSELERSYQRFTAFY--------ASRHSGRKLT 580
Query: 1448 WTW-LGWAELQ---FGNQ-TLHVSTVQMWLLLYLNDLKAVSVESLLAFSGLSADMLNQAI 1502
W + L EL F N+ TL ST QM +LL N A +V+ L + + D+L Q +
Sbjct: 581 WLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVL 640
Query: 1503 GPLTSSRGPLDLHEQKDI------PGGVLKIRDGSKEPRSRWDIVRLIPPQTYLQAEGE- 1555
L S+ + E ++ P ++K+ G K + R +I +P +T + E E
Sbjct: 641 QILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNI--NVPMKTEQKQEQET 698
Query: 1556 DGQNLEKRRNLL-NCLIVRILK 1576
+N+E+ R LL IVRI+K
Sbjct: 699 THKNIEEDRKLLIQAAIVRIMK 720
Score = 37.0 bits (84), Expect = 0.16
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 1187 FGPRAAFLLALQNGCAGALLKLPFLKAAHVS----EQFARHIDQQIQGSRIGGAQEMERL 1242
F A F+ AL C + K A S E AR+ D ++ S +
Sbjct: 385 FNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEE----- 439
Query: 1243 AQLQQCL-QAVLIFSGLEIATTFEHYYQHYMADRLL--GVVSSWLEGAVLEQI----GPC 1295
A+L+ L Q +++F +E F+ +Y +A RL+ S E +++ ++ G
Sbjct: 440 AELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFE 499
Query: 1296 FPNRLPQQMLQSLSTSKELQRQF--HVYQLQQLD 1327
+ ++L Q+M Q + SK+L QF H+ + LD
Sbjct: 500 YTSKL-QRMFQDIGVSKDLNEQFKKHLTNSEPLD 532
>gi|150170706 anaphase promoting complex subunit 10 [Homo sapiens]
Length = 185
Score = 46.2 bits (108), Expect = 3e-04
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 855 KLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLV-ASEDSSYMPARVVVCGGDST 913
+L D N +TYW+S+GS H + + RR ++ L + D SY P+++ V G++
Sbjct: 44 QLRDDNLETYWQSDGSQ-PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNF 102
Query: 914 SSLHTELNSVNVMPSA-SRVILLEN---LTRFWPIIQIRIKRCQQGGIDTRIRGLEILGP 969
+L V PS V L +N TR + +IQI + Q G DT +R ++I P
Sbjct: 103 HNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTF-MIQIAVLANHQNGRDTHMRQIKIYTP 161
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1324 QQLDQELLKLEDTEKKI--------QVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEE 1375
+ L +L + D+E+K + G G+ +E + E+EEE G+ + E EEEEE
Sbjct: 248 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEE 307
Query: 1376 ENED 1379
E E+
Sbjct: 308 EEEE 311
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1324 QQLDQELLKLEDTEKKI--------QVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEE 1375
+ L +L + D+E+K + G G+ +E + E+EEE G+ + E EEEEE
Sbjct: 258 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEE 317
Query: 1376 ENED 1379
E E+
Sbjct: 318 EEEE 321
>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform 9
[Homo sapiens]
Length = 771
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1324 QQLDQELLKLEDTEKKI--------QVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEE 1375
+ L +L + D+E+K + G G+ +E + E+EEE G+ + E EEEEE
Sbjct: 249 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEE 308
Query: 1376 ENED 1379
E E+
Sbjct: 309 EEEE 312
>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform 8
[Homo sapiens]
Length = 780
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1324 QQLDQELLKLEDTEKKI--------QVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEE 1375
+ L +L + D+E+K + G G+ +E + E+EEE G+ + E EEEEE
Sbjct: 258 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEE 317
Query: 1376 ENED 1379
E E+
Sbjct: 318 EEEE 321
>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform 5
[Homo sapiens]
Length = 748
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1324 QQLDQELLKLEDTEKKI--------QVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEE 1375
+ L +L + D+E+K + G G+ +E + E+EEE G+ + E EEEEE
Sbjct: 226 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEE 285
Query: 1376 ENED 1379
E E+
Sbjct: 286 EEEE 289
>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform 4
[Homo sapiens]
Length = 737
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1324 QQLDQELLKLEDTEKKI--------QVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEE 1375
+ L +L + D+E+K + G G+ +E + E+EEE G+ + E EEEEE
Sbjct: 215 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEE 274
Query: 1376 ENED 1379
E E+
Sbjct: 275 EEEE 278
>gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isoform 3
[Homo sapiens]
Length = 526
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1324 QQLDQELLKLEDTEKKI--------QVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEE 1375
+ L +L + D+E+K + G G+ +E + E+EEE G+ + E EEEEE
Sbjct: 4 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEE 63
Query: 1376 ENED 1379
E E+
Sbjct: 64 EEEE 67
>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform 2
[Homo sapiens]
Length = 782
Score = 36.2 bits (82), Expect = 0.28
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1324 QQLDQELLKLEDTEKKI--------QVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEE 1375
+ L +L + D+E+K + G G+ +E + E+EEE G+ + E EEEEE
Sbjct: 260 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEE 319
Query: 1376 ENED 1379
E E+
Sbjct: 320 EEEE 323
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 35.4 bits (80), Expect = 0.48
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 828 CQGSSVEVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWESNGSAGSHYITLHMRRGILIR 887
C +S+EV + + S P + + LT+ P + G G H L RRG L+R
Sbjct: 1373 CTQTSMEVSDLRSKSFDCGSITPPQTTPLTELQPPSSPSRVGVTG-HVPLLERRRGPLVR 1431
Query: 888 QLTLLVASEDSSYMPARVVVCGGDSTSSLHTELNSVNVMPSASRVILLENLTRF 941
Q++L +A DS P TS +T L SVN +P + +L F
Sbjct: 1432 QISLNIA-PDSHLSPVH-------PTSFQNTALPSVNAVPYQGPQLTSTSLAEF 1477
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 35.0 bits (79), Expect = 0.62
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 1309 STSKELQRQFHVYQ--------LQQLDQELLKLEDTEKKIQVGLGASGKEHKSEKEEEAG 1360
S SKE Q+ H Y +Q+ D+ L K D K++++ + E + E+E E G
Sbjct: 154 SKSKEAQKGGHFYSAKPEILRAMQRADEALNK--DKIKRLELAVCDEPSEPEEEEEMEVG 211
Query: 1361 AAAVVDVAEGEEEEEENEDL 1380
V D +E + E E E++
Sbjct: 212 TTYVTDKSEEDNEIESEEEV 231
>gi|41281907 StAR-related lipid transfer (START) domain containing 13
isoform beta [Homo sapiens]
Length = 1105
Score = 35.0 bits (79), Expect = 0.62
Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 46/261 (17%)
Query: 706 EAVDACMACLRSPNTDREVLQELIFFLHRLTSVSRDYAVVLNQLGA-------------- 751
+AV A + L N REVLQ L+ FL+ + ++ + + L
Sbjct: 761 QAVQAAILLLADEN--REVLQTLLCFLNDVVNLVEENQMTPMNLAVCLAPSLFHLNLLKK 818
Query: 752 ---------RDAISKALEKHLGK-LELAQELRDMVFKCEKHAHLYRKLITNILGGCIQMV 801
+ A K +K L + L AQ L M+ +C++ + +L+ +
Sbjct: 819 ESSPRVIQKKYATGKPDQKDLNENLAAAQGLAHMIMECDRLFEVPHELVAQSRNSYV--- 875
Query: 802 LGQIEDHRRTHQPINIPF------FDVFLRYLCQGSSVEVKED-KCWEKVEVSSNPHRA- 853
+ E H T + + F +L +L QG E KE K W + N A
Sbjct: 876 --EAEIHVPTLEELGTQLEESGATFHTYLNHLIQGLQKEAKEKFKGWVTCSSTDNTDLAF 933
Query: 854 SKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSSYMPARVVVCGGDST 913
K+ D NP W+++ + + +++ ++ D ++ +VV T
Sbjct: 934 KKVGDGNPLKLWKAS-------VEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDRQT 986
Query: 914 SSLHTELNSVNVMPSASRVIL 934
LNS+ PS V+L
Sbjct: 987 EIYQYVLNSMAPHPSRDFVVL 1007
>gi|16445031 StAR-related lipid transfer (START) domain containing
13 isoform gamma [Homo sapiens]
Length = 995
Score = 35.0 bits (79), Expect = 0.62
Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 46/261 (17%)
Query: 706 EAVDACMACLRSPNTDREVLQELIFFLHRLTSVSRDYAVVLNQLGA-------------- 751
+AV A + L N REVLQ L+ FL+ + ++ + + L
Sbjct: 651 QAVQAAILLLADEN--REVLQTLLCFLNDVVNLVEENQMTPMNLAVCLAPSLFHLNLLKK 708
Query: 752 ---------RDAISKALEKHLGK-LELAQELRDMVFKCEKHAHLYRKLITNILGGCIQMV 801
+ A K +K L + L AQ L M+ +C++ + +L+ +
Sbjct: 709 ESSPRVIQKKYATGKPDQKDLNENLAAAQGLAHMIMECDRLFEVPHELVAQSRNSYV--- 765
Query: 802 LGQIEDHRRTHQPINIPF------FDVFLRYLCQGSSVEVKED-KCWEKVEVSSNPHRA- 853
+ E H T + + F +L +L QG E KE K W + N A
Sbjct: 766 --EAEIHVPTLEELGTQLEESGATFHTYLNHLIQGLQKEAKEKFKGWVTCSSTDNTDLAF 823
Query: 854 SKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSSYMPARVVVCGGDST 913
K+ D NP W+++ + + +++ ++ D ++ +VV T
Sbjct: 824 KKVGDGNPLKLWKAS-------VEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDRQT 876
Query: 914 SSLHTELNSVNVMPSASRVIL 934
LNS+ PS V+L
Sbjct: 877 EIYQYVLNSMAPHPSRDFVVL 897
>gi|41281898 StAR-related lipid transfer (START) domain containing 13
isoform alpha [Homo sapiens]
Length = 1113
Score = 35.0 bits (79), Expect = 0.62
Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 46/261 (17%)
Query: 706 EAVDACMACLRSPNTDREVLQELIFFLHRLTSVSRDYAVVLNQLGA-------------- 751
+AV A + L N REVLQ L+ FL+ + ++ + + L
Sbjct: 769 QAVQAAILLLADEN--REVLQTLLCFLNDVVNLVEENQMTPMNLAVCLAPSLFHLNLLKK 826
Query: 752 ---------RDAISKALEKHLGK-LELAQELRDMVFKCEKHAHLYRKLITNILGGCIQMV 801
+ A K +K L + L AQ L M+ +C++ + +L+ +
Sbjct: 827 ESSPRVIQKKYATGKPDQKDLNENLAAAQGLAHMIMECDRLFEVPHELVAQSRNSYV--- 883
Query: 802 LGQIEDHRRTHQPINIPF------FDVFLRYLCQGSSVEVKED-KCWEKVEVSSNPHRA- 853
+ E H T + + F +L +L QG E KE K W + N A
Sbjct: 884 --EAEIHVPTLEELGTQLEESGATFHTYLNHLIQGLQKEAKEKFKGWVTCSSTDNTDLAF 941
Query: 854 SKLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLVASEDSSYMPARVVVCGGDST 913
K+ D NP W+++ + + +++ ++ D ++ +VV T
Sbjct: 942 KKVGDGNPLKLWKAS-------VEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDRQT 994
Query: 914 SSLHTELNSVNVMPSASRVIL 934
LNS+ PS V+L
Sbjct: 995 EIYQYVLNSMAPHPSRDFVVL 1015
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 1334 EDTEKKIQVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEEENEDLYYEGAMPEVSVLV 1393
++ EK ++ G G+ G + + E+EEE + E EEEEEE E+ +G +S+
Sbjct: 842 KNDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEEEEEEEKGNEEPLSL-- 899
Query: 1394 LSRHSWP 1400
WP
Sbjct: 900 ----DWP 902
>gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens]
Length = 501
Score = 33.5 bits (75), Expect = 1.8
Identities = 51/226 (22%), Positives = 87/226 (38%), Gaps = 37/226 (16%)
Query: 1167 DFVPRYCEHFNILQNSSSELFGP-RAAFLLALQNGCAGALLKLPFLKAAHVSEQFARHID 1225
+++ Y + LQ+ + ELFG +A F +NG K H H+D
Sbjct: 191 EYLQDYTDRVKPLQDQN-ELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGA----HLD 245
Query: 1226 QQIQGSRIGGAQEMERLAQLQ-QCLQAVLIFSGLEIATTFEHYYQHYMADRLLGVVSSWL 1284
+ E LA L L++ L+ GL+ T E Q + +
Sbjct: 246 -------LSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTK--------- 289
Query: 1285 EGAVLEQIGPCFPNRLPQQMLQSLSTSKELQRQF---HVYQLQQLDQELLKLEDTEKKIQ 1341
G LE + + P+ T + F +Y+ ++ E L T + +Q
Sbjct: 290 -GKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHL--THENVQ 346
Query: 1342 VGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEEENEDLYYEGAMP 1387
+G+E + E+EE+ ++E E E+EENE +Y +P
Sbjct: 347 RKQARTGEEREEEEEEQ--------ISESESEDEENEIIYNPKNLP 384
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 33.5 bits (75), Expect = 1.8
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 1301 PQQMLQSLSTSKELQRQFHVYQLQQLDQELLKLEDTEKKIQVGLGASGKEHKSEKEEEAG 1360
P++M ++L T +E +L++LD+E +ED E + E+EEE
Sbjct: 368 PEEM-KNLETQEE-----EFSELEELDEEASGMEDDEDTSGLEEEEEEPSGLEEEEEEEA 421
Query: 1361 AAAVVDVAEGEEEEEE---NEDLYYEGAMPEVSVLVLSRHSWPVAS 1403
+ D A G EEEEE +D ++G LV ++H + S
Sbjct: 422 SGLEEDEASGLEEEEEQTSEQDSTFQG-----HTLVDAKHEVEITS 462
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 33.5 bits (75), Expect = 1.8
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 1300 LPQQMLQSLSTSKELQRQFHVYQLQQLDQELLKLEDTEKKIQVGLGASGKEHKSEKEEEA 1359
LP + +T+++ ++ Q ++++L + + + G G G+E E+EEE
Sbjct: 588 LPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEEEEE 647
Query: 1360 GAA-------AVVDVAE------GEEEEEENED 1379
A DV E GEEEEEE ED
Sbjct: 648 DVAENRYFEMGPPDVEEEEGGGQGEEEEEEEED 680
>gi|15529978 zinc finger protein 622 [Homo sapiens]
Length = 477
Score = 33.5 bits (75), Expect = 1.8
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 1322 QLQQLDQELLKL-----EDTEKKIQVGLGASGKEHKSEKEEEA-GAAAVVDVAEGEEEEE 1375
+LQ +Q+ KL ED+E++ + G ++ S++E E A+ DV E + EEE
Sbjct: 179 RLQWFEQQAKKLAKQQEEDSEEEEEDLDGDDWEDIDSDEELECEDTEAMDDVVEQDAEEE 238
Query: 1376 ENEDLYYEGAMPEVSVLVLSRHS 1398
E E+ GA+P L S HS
Sbjct: 239 EAEEGPPLGAIPITDCLFCSHHS 261
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 33.1 bits (74), Expect = 2.4
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 1340 IQVGLGASGKEHKSEKEEEAGAAAVVDVAEGEEEEEENEDLYYEGAMPE 1388
I L + G+E + E+EEE + EGEEEEEE E+ EG E
Sbjct: 397 ITTSLKSEGEEEEEEEEEEEE-----EEGEGEEEEEEGEEEEEEGGEGE 440
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 33.1 bits (74), Expect = 2.4
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 578 AYPSLLEAQEDVLLLDAQAQAKDSEDAAKVEAKEPPSQSPNTP 620
+Y S A++ + L +Q+ + ED AK EPPS +P+TP
Sbjct: 344 SYSSSGRAEQGIQLRHSQSVPQQPEDEAKPHEVEPPSVTPDTP 386
>gi|28558975 mediator complex subunit 17 [Homo sapiens]
Length = 651
Score = 33.1 bits (74), Expect = 2.4
Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 511 EVLQILQENLDGEILDDEILAELAVPIELAQDLLLTLPQRLNDSALRDLINCHVYKKYGP 570
EV++ +LD +I +D ++ +P +L + + + + DL +++K+ P
Sbjct: 223 EVIKNTDLDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLP 282
Query: 571 EALAGNQAYPSLLEAQEDVLLLDAQAQAKDSEDAAKVEAKEP 612
++ G+ + + LEA ++VLL + A+ S +A +++++ P
Sbjct: 283 KSKPGSPHWQTKLEAAQNVLLC-KEIFAQLSREAVQIKSQVP 323
>gi|28559080 spermine oxidase isoform 4 [Homo sapiens]
Length = 532
Score = 32.7 bits (73), Expect = 3.1
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 243 PQVPGRVLFSLVKRYLHVTSL------LDQLNDSAAEPGAQNTSAPEEL-SGERGQLEL- 294
P+ R+ +++++YL V S +D+++ SA + A + SG +EL
Sbjct: 187 PEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELL 246
Query: 295 -EFSMAMGTLISELVQAMRWDQASDRPRSSARSPGSIFQPQLAD-VSPGLP 343
E A + + V+ + WDQAS RPR P + + Q PGLP
Sbjct: 247 AEGIPAHVIQLGKPVRCIHWDQASARPRGPEIEPRGVLKRQYTSFFRPGLP 297
>gi|28559076 spermine oxidase isoform 2 [Homo sapiens]
Length = 502
Score = 32.7 bits (73), Expect = 3.1
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 243 PQVPGRVLFSLVKRYLHVTSL------LDQLNDSAAEPGAQNTSAPEEL-SGERGQLEL- 294
P+ R+ +++++YL V S +D+++ SA + A + SG +EL
Sbjct: 187 PEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELL 246
Query: 295 -EFSMAMGTLISELVQAMRWDQASDRPRSSARSPGSIFQPQLAD-VSPGLP 343
E A + + V+ + WDQAS RPR P + + Q PGLP
Sbjct: 247 AEGIPAHVIQLGKPVRCIHWDQASARPRGPEIEPRGVLKRQYTSFFRPGLP 297
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,831,179
Number of Sequences: 37866
Number of extensions: 3291534
Number of successful extensions: 12826
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 12321
Number of HSP's gapped (non-prelim): 288
length of query: 1698
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1582
effective length of database: 13,855,062
effective search space: 21918708084
effective search space used: 21918708084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.