Guide to the Human Genome
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Name: STARD13 Sequence: fasta or formatted (1105aa) NCBI GI: 41281907
Description:

StAR-related lipid transfer (START) domain containing 13 isoform beta

Referenced in:

Liver

Other entries for this name:
alt prot [995aa] StAR-related lipid transfer (START) domain containing 13 isoform ...
alt prot [1113aa] StAR-related lipid transfer (START) domain containing 13 isoform ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         59           3
 C cysteine            2.4         26           2
 D aspartate           5.8         64           2
 E glutamate           6.8         75           2
 F phenylalanine       3.1         34           2
 G glycine             6.0         66           2
 H histidine           3.4         38           1
 I isoleucine          2.9         32           1
 K lysine              5.5         61           2
 L leucine            10.7        118           3
 M methionine          2.1         23           1
 N asparagine          4.4         49           1
 P proline             6.4         71           3
 Q glutamine           5.1         56           2
 R arginine            6.3         70           2
 S serine              9.1        101           3
 T threonine           4.6         51           2
 V valine              6.9         76           2
 W tryptophan          1.4         16           1
 Y tyrosine            1.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   StAR-related lipid transfer (START) domain containin... 
STARD13               0.954   StAR-related lipid transfer (START) domain containin...
STARD13               0.896   StAR-related lipid transfer (START) domain containin...
DLC1                  0.483   deleted in liver cancer 1 isoform 1 
DLC1                  0.481   deleted in liver cancer 1 isoform 2 
STARD8                0.295   StAR-related lipid transfer (START) domain containi...
STARD8                0.295   StAR-related lipid transfer (START) domain containi...
STARD8                0.295   StAR-related lipid transfer (START) domain containin...
ARHGAP18              0.035   Rho GTPase activating protein 18 
C20orf95              0.030   PREDICTED: chromosome 20 open reading frame 95 [Hom...
C20orf95              0.030   PREDICTED: chromosome 20 open reading frame 95 [Hom...
C20orf95              0.030   PREDICTED: Rho GTPase-activating protein 18-like [H...
ARHGAP4               0.026   Rho GTPase activating protein 4 
ARHGAP6               0.026   Rho GTPase activating protein 6 isoform 4 
ARHGAP6               0.026   Rho GTPase activating protein 6 isoform 3 
ARHGAP6               0.026   Rho GTPase activating protein 6 isoform 1 
GRLF1                 0.026   glucocorticoid receptor DNA binding factor 1 
SH3BP1                0.026   SH3-domain binding protein 1 
SRGAP3                0.025   SLIT-ROBO Rho GTPase activating protein 3 isoform a ...
ARHGAP28              0.025   Rho GTPase activating protein 28 isoform a 
ARHGAP28              0.025   Rho GTPase activating protein 28 isoform b 
RALBP1                0.024   ralA binding protein 1 
SRGAP3                0.024   SLIT-ROBO Rho GTPase activating protein 3 isoform b ...
MYO9B                 0.023   myosin IXB isoform 2 
MYO9B                 0.023   myosin IXB isoform 1 
MYO9A                 0.022   myosin IXA 
ARHGAP17              0.022   nadrin isoform 1 
ARHGAP17              0.022   nadrin isoform 2 
SRGAP1                0.022   SLIT-ROBO Rho GTPase activating protein 1 
ARHGAP15              0.022   ARHGAP15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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