Guide to the Human Genome
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Name: MSH6 Sequence: fasta or formatted (1360aa) NCBI GI: 4504191
Description:

mutS homolog 6

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         88           4
 C cysteine            2.4         32           1
 D aspartate           5.4         74           2
 E glutamate           8.8        120           5
 F phenylalanine       3.9         53           2
 G glycine             6.7         91           3
 H histidine           1.9         26           1
 I isoleucine          4.5         61           2
 K lysine              7.4        101           3
 L leucine             9.1        124           2
 M methionine          2.2         30           2
 N asparagine          3.3         45           2
 P proline             4.7         64           2
 Q glutamine           2.8         38           1
 R arginine            6.3         86           3
 S serine              8.6        117           2
 T threonine           5.7         77           2
 V valine              5.6         76           2
 W tryptophan          1.2         16           2
 Y tyrosine            3.0         41           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mutS homolog 6 
MSH3                  0.098   mutS homolog 3 
MSH2                  0.077   mutS homolog 2 
MSH5                  0.043   mutS homolog 5 isoform c 
MSH5                  0.043   mutS homolog 5 isoform c 
MSH5                  0.043   mutS homolog 5 isoform a 
MSH5                  0.042   mutS homolog 5 isoform b 
MSH4                  0.038   mutS homolog 4 
WHSC1L1               0.019   WHSC1L1 protein isoform long 
WHSC1L1               0.019   WHSC1L1 protein isoform short 
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform ...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
HDGF2                 0.011   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.011   hepatoma-derived growth factor-related protein 2 iso...
ZCWPW1                0.010   zinc finger, CW type with PWWP domain 1 
NSD1                  0.010   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.010   nuclear receptor binding SET domain protein 1 isofor...
CHGB                  0.010   chromogranin B precursor 
PSIP1                 0.010   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.010   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
PSIP1                 0.010   PC4 and SFRS1 interacting protein 1 isoform 2 
WDR87                 0.010   NYD-SP11 protein 
N-PAC                 0.008   cytokine-like nuclear factor n-pac 
ZRANB2                0.007   zinc finger protein 265 isoform 1 
HDGFRP3               0.007   hepatoma-derived growth factor, related protein 3 [Ho...
NEFM                  0.007   neurofilament, medium polypeptide 150kDa isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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