Guide to the Human Genome
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Name: CUL9 Sequence: fasta or formatted (2517aa) NCBI GI: 24307991
Description:

p53-associated parkin-like cytoplasmic protein

Referenced in:

Cullins and SCF Complexes
Ring Finger Proteins
p53 Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        176           3
 C cysteine            3.1         77           2
 D aspartate           4.2        106           3
 E glutamate           8.7        218          11
 F phenylalanine       3.1         77           3
 G glycine             6.2        157           2
 H histidine           2.9         73           2
 I isoleucine          3.2         80           2
 K lysine              3.1         77           2
 L leucine            13.1        330           4
 M methionine          2.3         58           2
 N asparagine          2.7         67           2
 P proline             6.3        158           3
 Q glutamine           5.8        145           2
 R arginine            6.1        154           2
 S serine              8.3        208           4
 T threonine           4.6        117           2
 V valine              5.7        144           3
 W tryptophan          1.5         39           2
 Y tyrosine            2.2         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   p53-associated parkin-like cytoplasmic protein [Homo... 
CUL7                  0.258   cullin 7 
ARIH2                 0.030   ariadne homolog 2 
ARIH1                 0.024   ariadne ubiquitin-conjugating enzyme E2 binding pro...
ANKIB1                0.022   ankyrin repeat and IBR domain containing 1 
HERC2                 0.014   hect domain and RLD 2 
HECTD3                0.014   HECT domain containing 3 
ZZEF1                 0.013   zinc finger, ZZ type with EF hand domain 1 
RNF14                 0.013   ring finger protein 14 isoform 1 
RNF14                 0.013   ring finger protein 14 isoform 1 
RNF14                 0.013   ring finger protein 14 isoform 1 
RNF14                 0.013   ring finger protein 14 isoform 2 
RNF14                 0.013   ring finger protein 14 isoform 1 
RNF19B                0.013   ring finger protein 19B isoform b 
RNF19B                0.013   ring finger protein 19B isoform a 
RNF19A                0.011   ring finger protein 19 
RNF19A                0.011   ring finger protein 19 
RNF144A               0.010   ring finger protein 144 
PARK2                 0.008   parkin isoform 3 
PARK2                 0.008   parkin isoform 2 
PARK2                 0.008   parkin isoform 1 
RNF144B               0.008   IBR domain containing 2 
RNF31                 0.007   ring finger protein 31 
UBTF                  0.006   upstream binding transcription factor, RNA polymera...
UBTF                  0.006   upstream binding transcription factor, RNA polymera...
UBTF                  0.006   upstream binding transcription factor, RNA polymerase...
RBCK1                 0.006   RanBP-type and C3HC4-type zinc finger containing 1 is...
RBCK1                 0.006   RanBP-type and C3HC4-type zinc finger containing 1 ...
RNF217                0.006   ring finger protein 217 
ARID3A                0.005   AT rich interactive domain 3A (BRIGHT- like) protein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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