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Search of human proteins with 41349478
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens]
(171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens] 355 8e-99
gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens] 244 3e-65
gi|147905620 PR domain containing 9 [Homo sapiens] 240 5e-64
gi|41349466 PR domain containing 11 [Homo sapiens] 98 4e-21
gi|41349474 PR domain containing 4 [Homo sapiens] 46 2e-05
gi|172072684 PR domain containing 1, with ZNF domain isoform 1 [... 44 7e-05
gi|208022698 retinoblastoma protein-binding zinc finger protein ... 43 1e-04
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 43 1e-04
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 43 1e-04
gi|15042949 PR domain containing 12 [Homo sapiens] 37 0.008
gi|13376064 zinc finger protein 408 [Homo sapiens] 35 0.024
gi|13375636 PR domain containing 14 [Homo sapiens] 34 0.054
gi|4826828 myelodysplasia syndrome protein 1 [Homo sapiens] 33 0.092
gi|94536868 PR domain containing 15 isoform 2 [Homo sapiens] 32 0.27
gi|210031233 PR domain containing 6 [Homo sapiens] 30 0.78
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 30 1.0
gi|4505349 necdin [Homo sapiens] 29 1.7
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 29 2.3
gi|51988914 fibroblast growth factor receptor-like 1 precursor [... 28 3.0
gi|51988910 fibroblast growth factor receptor-like 1 precursor [... 28 3.0
gi|51988912 fibroblast growth factor receptor-like 1 precursor [... 28 3.0
gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s... 28 3.0
gi|187608809 hypothetical protein LOC23240 isoform 2 [Homo sapiens] 28 3.9
gi|196114949 hypothetical protein LOC23240 isoform 1 [Homo sapiens] 28 3.9
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 27 6.6
gi|28558977 mediator complex subunit 26 [Homo sapiens] 27 6.6
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 27 8.6
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 27 8.6
gi|84626580 hypothetical protein LOC80178 [Homo sapiens] 27 8.6
gi|21361462 EH-domain containing 2 [Homo sapiens] 27 8.6
>gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens]
Length = 171
Score = 355 bits (912), Expect = 8e-99
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD 60
MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD
Sbjct: 1 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD 60
Query: 61 LPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMRTKARDPSMS 120
LPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMRTKARDPSMS
Sbjct: 61 LPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMRTKARDPSMS 120
Query: 121 LMLSGLFKSKISQSTCGTQSLLSELPRTICKKTSPTRESLPRGSESGAAIF 171
LMLSGLFKSKISQSTCGTQSLLSELPRTICKKTSPTRESLPRGSESGAAIF
Sbjct: 121 LMLSGLFKSKISQSTCGTQSLLSELPRTICKKTSPTRESLPRGSESGAAIF 171
>gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens]
Length = 492
Score = 244 bits (622), Expect = 3e-65
Identities = 117/138 (84%), Positives = 122/138 (88%), Gaps = 2/138 (1%)
Query: 1 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD 60
MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD
Sbjct: 207 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD 266
Query: 61 LPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMR--TKARDPS 118
LPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMR ARD
Sbjct: 267 LPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMRYVNCARDDE 326
Query: 119 MSLMLSGLFKSKISQSTC 136
+++ + +I TC
Sbjct: 327 EQNLVAFQYHRQIFYRTC 344
>gi|147905620 PR domain containing 9 [Homo sapiens]
Length = 894
Score = 240 bits (612), Expect = 5e-64
Identities = 115/138 (83%), Positives = 121/138 (87%), Gaps = 2/138 (1%)
Query: 1 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD 60
MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD
Sbjct: 207 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD 266
Query: 61 LPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMR--TKARDPS 118
LPLGLHFGPYEGRITEDEEAAN+GYSWLITKGRNCYEYVDGKDKS ANWMR ARD
Sbjct: 267 LPLGLHFGPYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDE 326
Query: 119 MSLMLSGLFKSKISQSTC 136
+++ + +I TC
Sbjct: 327 EQNLVAFQYHRQIFYRTC 344
>gi|41349466 PR domain containing 11 [Homo sapiens]
Length = 511
Score = 97.8 bits (242), Expect = 4e-21
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Query: 2 CQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDL 61
CQ +F+D C HGPP FV D+ V G P+R+AL++P G+ + ++ + NE +
Sbjct: 113 CQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEV--I 170
Query: 62 PLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMR 111
P G FGPYEG+I+ +++A +SWLI N Y+ +DG D++ ANWMR
Sbjct: 171 PKGHIFGPYEGQISTQDKSAGF-FSWLIVDKNNRYKSIDGSDETKANWMR 219
>gi|41349474 PR domain containing 4 [Homo sapiens]
Length = 801
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 1 MCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASD 60
+C + C HGP TFV D+ ++ +R+ LSLP L + S I A +GVW
Sbjct: 379 LCDRAYPSDCPEHGPVTFVPDTPIE----SRARLSLPKQLVLRQS-IVGAEVGVWT-GET 432
Query: 61 LPLGLHFGPYEGRITEDEEAAN-----SGYSWLITKGRNCYEYVDGKDKSSANWM 110
+P+ FGP G+ + E A + W I + D++ NWM
Sbjct: 433 IPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHNGVLEFCIITTDENECNWM 487
>gi|172072684 PR domain containing 1, with ZNF domain isoform 1
[Homo sapiens]
Length = 825
Score = 43.9 bits (102), Expect = 7e-05
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 21 DSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEA 80
DS D G ++ SLP L + + +GV ++ +P G FGP G I ++
Sbjct: 68 DSGADGGTSVQAEASLPRNLLFKYATNSEEVIGVMSKEY-IPKGTRFGPLIGEIYTNDTV 126
Query: 81 ---ANSGYSWLITKGRNCYEYVDGKDKSSANWMR 111
AN Y W I + ++DG ++ +NWMR
Sbjct: 127 PKNANRKYFWRIYSRGELHHFIDGFNEEKSNWMR 160
>gi|208022698 retinoblastoma protein-binding zinc finger protein
isoform d [Homo sapiens]
Length = 226
Score = 43.1 bits (100), Expect = 1e-04
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 29 PNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWL 88
P LP +R+ PS + + +GVW L G FGP+ G + + N+ Y W
Sbjct: 19 PEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILK-GKKFGPFVGDKKKRSQVKNNVYMWE 77
Query: 89 ITKGRNCYEYVDGKDKSSANWMR 111
+ + +D D NW+R
Sbjct: 78 VYYPNLGWMCIDATDPEKGNWLR 100
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 43.1 bits (100), Expect = 1e-04
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 29 PNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWL 88
P LP +R+ PS + + +GVW L G FGP+ G + + N+ Y W
Sbjct: 19 PEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILK-GKKFGPFVGDKKKRSQVKNNVYMWE 77
Query: 89 ITKGRNCYEYVDGKDKSSANWMR 111
+ + +D D NW+R
Sbjct: 78 VYYPNLGWMCIDATDPEKGNWLR 100
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 43.1 bits (100), Expect = 1e-04
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 29 PNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWL 88
P LP +R+ PS + + +GVW L G FGP+ G + + N+ Y W
Sbjct: 19 PEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILK-GKKFGPFVGDKKKRSQVKNNVYMWE 77
Query: 89 ITKGRNCYEYVDGKDKSSANWMR 111
+ + +D D NW+R
Sbjct: 78 VYYPNLGWMCIDATDPEKGNWLR 100
>gi|15042949 PR domain containing 12 [Homo sapiens]
Length = 367
Score = 37.0 bits (84), Expect = 0.008
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 32 SALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEE---AANSGYSWL 88
S+L LP + I S IP GLG++++ + + G GP+ GR+ E N+ W
Sbjct: 80 SSLVLPAEVIIAQSSIPGEGLGIFSK-TWIKAGTEMGPFTGRVIAPEHVDICKNNNLMWE 138
Query: 89 ITKGRNCYEY-VDGKDKSSANWM 110
+ Y +D + +WM
Sbjct: 139 VFNEDGTVRYFIDASQEDHRSWM 161
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 35.4 bits (80), Expect = 0.024
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 29 PNRSAL---SLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEE 79
P R L SLP GL +GPS + LGVW L GL +GP E E+
Sbjct: 47 PTRDILALKSLPRGLALGPSLAKEQRLGVWCVGDPLQPGLLWGPLEEESASKEK 100
>gi|13375636 PR domain containing 14 [Homo sapiens]
Length = 571
Score = 34.3 bits (77), Expect = 0.054
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 30 NRSALSLPPGLRIGPS---GIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSG-- 84
++ +L LP GL + + +P G+ +S + G+ FGP++G++ E G
Sbjct: 243 DKDSLQLPEGLCLMQTVFGEVPHFGVFC---SSFIAKGVRFGPFQGKVVNASEVKTYGDN 299
Query: 85 -YSWLITKGRNCYEYVDGKDKSSANWM 110
W I + + ++DGK + NWM
Sbjct: 300 SVMWEIFEDGHLSHFIDGKG-GTGNWM 325
>gi|4826828 myelodysplasia syndrome protein 1 [Homo sapiens]
Length = 169
Score = 33.5 bits (75), Expect = 0.092
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 34 LSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSW 87
+ +P + S +P AGLG+W + + +G FGPY G + + Y W
Sbjct: 74 IPIPAEFELRESNMPGAGLGIWTKRK-IEVGEKFGPYVGE--QRSNLKDPSYGW 124
>gi|94536868 PR domain containing 15 isoform 2 [Homo sapiens]
Length = 1178
Score = 32.0 bits (71), Expect = 0.27
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 2 CQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDL 61
C + C GP VKDS V +R+ SLPP L I + GV+ + L
Sbjct: 54 CSQYHDSECPELGPVVMVKDSFV----LSRARSSLPPNLEI--RRLEDGAEGVF-AITQL 106
Query: 62 PLGLHFGPYEGRITEDEEAANSGYSWLITKGRN--CYEYVDGKDKSSANWM 110
FGP+E R E ++ + K + C+ D ++ NWM
Sbjct: 107 VKRTQFGPFESRRVAKWEKESAFPLKVFQKDGHPVCF---DTSNEDDCNWM 154
>gi|210031233 PR domain containing 6 [Homo sapiens]
Length = 595
Score = 30.4 bits (67), Expect = 0.78
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 9 SCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFG 68
S AA PP + + D S PGL G + G W G
Sbjct: 227 SAAAAAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTW-----------IG 275
Query: 69 PYEGRITEDEEAA-----NSGYSWLI-TKGRNCYEYVDGKDKSSANWMR 111
P++G + E+ N+ + W I + ++DG + S ++WMR
Sbjct: 276 PFQGVLLPPEKVQAGAVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMR 324
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 11 AAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGL---HF 67
A HGPP+ A GH + PPG G+P G+ A P GL H
Sbjct: 271 AGHGPPSAGTPGAGHPGHGHSHPHPFPPG------GMPHPGMSQMQLAHHGPHGLGHPHA 324
Query: 68 GP 69
GP
Sbjct: 325 GP 326
>gi|4505349 necdin [Homo sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 1.7
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 11 AAHGPPTFVKDS-AVDKGHPNRSALSLPPGLRIGPSGIPQAG--LGVWNEASDLPLGLHF 67
AA P + V S V +G P + L+ P +GP+ PQA N+ D P L
Sbjct: 14 AAEAPNSEVHSSPGVSEGVPPSATLAEPQSPPLGPTAAPQAAPPPQAPNDEGD-PKALQQ 72
Query: 68 GPYEGRITEDEEAANSG-----YSWLITKGRNCYEYVDGKD-KSSANWMRTKARD 116
EGR + AA G + L+ K YV KD K W +D
Sbjct: 73 AAEEGRAHQAPSAAQPGPAPPAPAQLVQKAHELMWYVLVKDQKKMIIWFPDMVKD 127
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 28.9 bits (63), Expect = 2.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 2 CQNFFIDSCA-AHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGP--SGIPQAGLGVWNE 57
CQ D+C AH KD +++G P A + L +GP G P + L V+ E
Sbjct: 215 CQEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSVFPE 273
>gi|51988914 fibroblast growth factor receptor-like 1 precursor
[Homo sapiens]
Length = 504
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 13 HGPPTFVKDSAVDKGHPNRSALSLPPGLRI----GPSGIPQAGLG 53
H PP +D + DK P+ +ALS PG+ + G PQ LG
Sbjct: 417 HRPPGTARDRSGDKDLPSLAALSAGPGVGLCEEHGSPAAPQHLLG 461
>gi|51988910 fibroblast growth factor receptor-like 1 precursor
[Homo sapiens]
Length = 504
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 13 HGPPTFVKDSAVDKGHPNRSALSLPPGLRI----GPSGIPQAGLG 53
H PP +D + DK P+ +ALS PG+ + G PQ LG
Sbjct: 417 HRPPGTARDRSGDKDLPSLAALSAGPGVGLCEEHGSPAAPQHLLG 461
>gi|51988912 fibroblast growth factor receptor-like 1 precursor
[Homo sapiens]
Length = 504
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 13 HGPPTFVKDSAVDKGHPNRSALSLPPGLRI----GPSGIPQAGLG 53
H PP +D + DK P+ +ALS PG+ + G PQ LG
Sbjct: 417 HRPPGTARDRSGDKDLPSLAALSAGPGVGLCEEHGSPAAPQHLLG 461
>gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
sapiens]
Length = 412
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 8 DSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHF 67
D GP S+ + S L ++ PS I + G+ N LP+GL
Sbjct: 247 DPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLAL 306
Query: 68 GPYEGRITEDE 78
GP ++ +E
Sbjct: 307 GPTREKLAPEE 317
>gi|187608809 hypothetical protein LOC23240 isoform 2 [Homo sapiens]
Length = 1609
Score = 28.1 bits (61), Expect = 3.9
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 54 VWNEASDLPLGLHFGPYEGRITEDEEAAN-SGYSWLITKGRNCYEYVDGKDKSSANWMRT 112
+++E D+P PY + +++ N +W +K R C K+ +
Sbjct: 1177 MFSEKQDIPFVEQEDPYRKKKLQEKREGNLQNLNW--SKSRTCR-------KNKKRGVAP 1227
Query: 113 KARDPSMS---LMLSGLFKSKISQSTCGTQSLLSELPRTICKKTSPTRESLP 161
+R P S L+ S +S++S + E R +CK + SLP
Sbjct: 1228 VSRPPEQSDLKLVCSDFERSELSSDINVRSWCIQESTREVCKADAEIASSLP 1279
>gi|196114949 hypothetical protein LOC23240 isoform 1 [Homo sapiens]
Length = 1610
Score = 28.1 bits (61), Expect = 3.9
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 54 VWNEASDLPLGLHFGPYEGRITEDEEAAN-SGYSWLITKGRNCYEYVDGKDKSSANWMRT 112
+++E D+P PY + +++ N +W +K R C K+ +
Sbjct: 1178 MFSEKQDIPFVEQEDPYRKKKLQEKREGNLQNLNW--SKSRTCR-------KNKKRGVAP 1228
Query: 113 KARDPSMS---LMLSGLFKSKISQSTCGTQSLLSELPRTICKKTSPTRESLP 161
+R P S L+ S +S++S + E R +CK + SLP
Sbjct: 1229 VSRPPEQSDLKLVCSDFERSELSSDINVRSWCIQESTREVCKADAEIASSLP 1280
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 27.3 bits (59), Expect = 6.6
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 119 MSLMLSGLFKSKISQ---STCGTQSLLSELPRTICKKTSPTR---ESLPRGSESGAAIF 171
+S++L+ L++ K S+ + C T LS + + K S T +SLP GS G I+
Sbjct: 183 ISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGPVIY 241
>gi|28558977 mediator complex subunit 26 [Homo sapiens]
Length = 600
Score = 27.3 bits (59), Expect = 6.6
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 14 GPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGR 73
GPP V ++ D PN S L G SG P++ AS L H GP R
Sbjct: 160 GPPPKVSKASHDPLVPNSSPLPTN-----GISGSPESF------ASSLDGSGHAGPEGSR 208
Query: 74 ITEDEEAANSG 84
+ DE +SG
Sbjct: 209 LERDENDKHSG 219
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 26.9 bits (58), Expect = 8.6
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 34 LSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGP---------------YEGRITEDE 78
+ +P + S IP AGLGVW + + G GP +E +T+ E
Sbjct: 78 IPIPADFELRESSIPGAGLGVWAKRK-MEAGERLGPCVVVPRAAAKETDFGWEQILTDVE 136
Query: 79 EAANSGYSWLITKGRNCYEY-VDGKDKSSANWMR 111
+ G I++ ++ VD + +W++
Sbjct: 137 VSPQEGCITKISEDLGSEKFCVDANQAGAGSWLK 170
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 26.9 bits (58), Expect = 8.6
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 34 LSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGP---------------YEGRITEDE 78
+ +P + S IP AGLGVW + + G GP +E +T+ E
Sbjct: 78 IPIPADFELRESSIPGAGLGVWAKRK-MEAGERLGPCVVVPRAAAKETDFGWEQILTDVE 136
Query: 79 EAANSGYSWLITKGRNCYEY-VDGKDKSSANWMR 111
+ G I++ ++ VD + +W++
Sbjct: 137 VSPQEGCITKISEDLGSEKFCVDANQAGAGSWLK 170
>gi|84626580 hypothetical protein LOC80178 [Homo sapiens]
Length = 433
Score = 26.9 bits (58), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 26 KGHPNRSALSLPPGLRIGPSG-IPQAGLGV 54
KGHP R LS+ G R+G P+ G G+
Sbjct: 150 KGHPERRLLSVGDGTRVGMGARTPRPGAGL 179
>gi|21361462 EH-domain containing 2 [Homo sapiens]
Length = 543
Score = 26.9 bits (58), Expect = 8.6
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 14/61 (22%)
Query: 64 GLHFGPYEGR-----ITEDEEAANSGYSWLITKGRNCYEYV-------DGK--DKSSANW 109
G H GP+ R + + EE ++ W++TK ++ Y+ + DGK + W
Sbjct: 416 GTHMGPFVERGPDEAMEDGEEGSDDEAEWVVTKDKSKYDEIFYNLAPADGKLSGSKAKTW 475
Query: 110 M 110
M
Sbjct: 476 M 476
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,684,590
Number of Sequences: 37866
Number of extensions: 361418
Number of successful extensions: 608
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 32
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.