Guide to the Human Genome
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Name: NDN Sequence: fasta or formatted (321aa) NCBI GI: 4505349
Description:

necdin

Referenced in:

Melanoma Antigen Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         35           2
 C cysteine            0.3          1           1
 D aspartate           3.4         11           1
 E glutamate           8.1         26           2
 F phenylalanine       3.1         10           2
 G glycine             4.4         14           1
 H histidine           2.2          7           1
 I isoleucine          3.4         11           2
 K lysine              5.6         18           2
 L leucine             9.7         31           3
 M methionine          3.4         11           1
 N asparagine          2.2          7           1
 P proline            10.0         32           3
 Q glutamine           4.7         15           2
 R arginine            6.9         22           2
 S serine              7.5         24           2
 T threonine           3.1         10           1
 V valine              6.2         20           1
 W tryptophan          2.2          7           1
 Y tyrosine            2.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   necdin 
MAGED2                0.266   melanoma antigen family D, 2 
MAGED2                0.266   melanoma antigen family D, 2 
MAGED2                0.266   melanoma antigen family D, 2 
TRO                   0.253   trophinin isoform 5 
TRO                   0.253   trophinin isoform 2 
TRO                   0.253   trophinin isoform 2 
NDNL2                 0.253   necdin-like 2 
MAGEF1                0.248   melanoma antigen family F, 1 
MAGED1                0.231   melanoma antigen family D, 1 isoform a 
MAGED1                0.231   melanoma antigen family D, 1 isoform b 
MAGED1                0.231   melanoma antigen family D, 1 isoform b 
MAGED4B               0.218   melanoma antigen family D, 4B isoform 2 
MAGED4B               0.218   melanoma antigen family D, 4B isoform 1 
MAGED4B               0.218   melanoma antigen family D, 4B isoform 1 
MAGED4                0.218   melanoma antigen family D, 4 
MAGEL2                0.215   MAGE-like protein 2 
MAGEB4                0.207   melanoma antigen family B, 4 
MAGEE1                0.200   melanoma antigen family E, 1 
MAGEB1                0.197   melanoma antigen family B, 1 
MAGEB1                0.197   melanoma antigen family B, 1 
MAGEB1                0.197   melanoma antigen family B, 1 
MAGEB2                0.191   melanoma antigen family B, 2 
LOC100292575          0.189   PREDICTED: similar to melanoma antigen family C, 2 ...
MAGEA10               0.188   melanoma antigen family A, 10 
MAGEA10               0.188   melanoma antigen family A, 10 
MAGEB18               0.186   melanoma antigen family B, 18 
MAGEB17               0.184   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.184   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.184   PREDICTED: melanoma antigen family B, 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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