Guide to the Human Genome
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Name: ZNF408 Sequence: fasta or formatted (720aa) NCBI GI: 13376064
Description:

zinc finger protein 408

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         55           2
 C cysteine            4.3         31           1
 D aspartate           3.6         26           1
 E glutamate           8.2         59           3
 F phenylalanine       2.1         15           1
 G glycine             8.6         62           1
 H histidine           4.3         31           1
 I isoleucine          1.1          8           1
 K lysine              4.4         32           2
 L leucine            10.7         77           3
 M methionine          1.1          8           1
 N asparagine          1.1          8           1
 P proline            10.8         78           2
 Q glutamine           6.0         43           2
 R arginine            6.9         50           2
 S serine              7.9         57           3
 T threonine           3.6         26           1
 V valine              5.3         38           2
 W tryptophan          1.0          7           1
 Y tyrosine            1.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 408 
ZNF782                0.174   zinc finger protein 782 
ZNF136                0.169   zinc finger protein 136 
ZNF709                0.164   zinc finger protein 709 isoform b 
ZNF709                0.164   zinc finger protein 709 isoform a 
ZNF169                0.163   zinc finger protein 169 
MZF1                  0.162   zinc finger protein 42 isoform 2 
MZF1                  0.162   zinc finger protein 42 isoform 1 
ZNF527                0.162   zinc finger protein 527 
LOC100292052          0.161   PREDICTED: similar to hCG1773661 
LOC100287226          0.161   PREDICTED: similar to hCG1773661 
LOC100287226          0.161   PREDICTED: hypothetical protein XP_002343677 
ZNF135                0.161   zinc finger protein 135 
ZNF85                 0.160   zinc finger protein 85 
LOC100287429          0.160   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.160   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.160   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF568                0.160   zinc finger protein 568 
ZNF84                 0.160   zinc finger protein 84 
ZNF84                 0.160   zinc finger protein 84 
ZNF497                0.159   zinc finger protein 497 
ZNF167                0.159   zinc finger protein 167 isoform 1 
ZNF675                0.159   zinc finger protein 675 
ZNF668                0.159   zinc finger protein 668 
ZNF629                0.159   zinc finger protein 629 
ZNF383                0.159   zinc finger protein 383 
ZNF648                0.159   zinc finger protein 648 
ZNF93                 0.158   zinc finger protein 93 
ZNF92                 0.158   zinc finger protein 92 isoform 1 
ZNF92                 0.158   zinc finger protein 92 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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