Guide to the Human Genome
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Name: C16orf59 Sequence: fasta or formatted (433aa) NCBI GI: 84626580
Description:

hypothetical protein LOC80178

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         57           4
 C cysteine            2.5         11           1
 D aspartate           2.8         12           1
 E glutamate           6.2         27           2
 F phenylalanine       0.9          4           1
 G glycine             7.4         32           2
 H histidine           1.8          8           1
 I isoleucine          0.9          4           1
 K lysine              3.5         15           1
 L leucine            13.4         58           2
 M methionine          2.1          9           1
 N asparagine          0.7          3           1
 P proline             9.2         40           3
 Q glutamine           7.2         31           2
 R arginine            8.8         38           2
 S serine              7.2         31           2
 T threonine           5.8         25           2
 V valine              4.8         21           1
 W tryptophan          1.2          5           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC80178 
LOC100133756          0.025   PREDICTED: hypothetical protein, partial 
ELK1                  0.017   ELK1 protein 
ELK1                  0.017   ELK1 protein 
AKT1S1                0.017   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.017   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.017   AKT1 substrate 1 (proline-rich) 
LOC728767             0.017   PREDICTED: hypothetical protein 
LOC728767             0.016   PREDICTED: hypothetical protein 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
PPP1R13L              0.013   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.013   protein phosphatase 1, regulatory subunit 13 like [H...
CASZ1                 0.013   castor homolog 1, zinc finger isoform a 
CASZ1                 0.013   castor homolog 1, zinc finger isoform b 
SCAF1                 0.013   SR-related CTD-associated factor 1 
KIAA1881              0.012   plasma membrane associated protein, S3-12 
C14orf4               0.012   chromosome 14 open reading frame 4 
CX3CL1                0.012   chemokine (C-X3-C motif) ligand 1 
LOC729915             0.012   PREDICTED: similar to Putative POM121-like protein ...
NUP62                 0.012   nucleoporin 62kDa 
NUP62                 0.012   nucleoporin 62kDa 
NUP62                 0.012   nucleoporin 62kDa 
NUP62                 0.012   nucleoporin 62kDa 
PDE4A                 0.012   phosphodiesterase 4A isoform 1 
IQSEC2                0.012   IQ motif and Sec7 domain 2 isoform1 
SRRM1                 0.012   serine/arginine repetitive matrix 1 
LOC100291136          0.011   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.011   PREDICTED: hypothetical protein XP_002343480 
IRS2                  0.011   insulin receptor substrate 2 
KIF1C                 0.011   kinesin family member 1C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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