Guide to the Human Genome
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Name: C1orf94 Sequence: fasta or formatted (408aa) NCBI GI: 41054804
Description:

hypothetical protein LOC84970 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {598aa} hypothetical protein LOC84970 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         22           2
 C cysteine            2.0          8           2
 D aspartate           4.2         17           1
 E glutamate           3.4         14           2
 F phenylalanine       4.4         18           1
 G glycine             6.9         28           2
 H histidine           1.5          6           2
 I isoleucine          1.7          7           1
 K lysine              6.6         27           2
 L leucine             9.6         39           3
 M methionine          2.2          9           1
 N asparagine          4.9         20           2
 P proline            13.7         56           4
 Q glutamine           7.1         29           2
 R arginine            3.4         14           1
 S serine              8.1         33           3
 T threonine           6.1         25           1
 V valine              4.4         18           1
 W tryptophan          0.7          3           1
 Y tyrosine            3.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84970 isoform b 
C1orf94               1.000   hypothetical protein LOC84970 isoform a 
PCLO                  0.019   piccolo isoform 2 
PCLO                  0.019   piccolo isoform 1 
ATXN2                 0.016   ataxin 2 
PTPN23                0.014   protein tyrosine phosphatase, non-receptor type 23 [...
TTN                   0.013   titin isoform N2-A 
LOC646862             0.012   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.012   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.012   PREDICTED: hypothetical protein LOC646862 
SHISA4                0.012   shisa homolog 4 
ZFHX3                 0.012   AT-binding transcription factor 1 
BAHD1                 0.012   bromo adjacent homology domain containing 1 
SMN2                  0.012   survival of motor neuron 2, centromeric isoform b [H...
SMN2                  0.012   survival of motor neuron 2, centromeric isoform c [H...
SMN1                  0.012   survival of motor neuron 1, telomeric isoform b [Hom...
SRRT                  0.011   arsenate resistance protein 2 isoform c 
SRRT                  0.011   arsenate resistance protein 2 isoform a 
PRAM1                 0.011   PML-RARA regulated adaptor molecule 1 
MLL4                  0.011   myeloid/lymphoid or mixed-lineage leukemia 4 
CASC3                 0.011   metastatic lymph node 51 
ABI3BP                0.011   ABI gene family, member 3 (NESH) binding protein [Ho...
PPARGC1B              0.011   peroxisome proliferator-activated receptor gamma, co...
SF1                   0.011   splicing factor 1 isoform 2 
SF1                   0.011   splicing factor 1 isoform 1 
RIN3                  0.011   Ras and Rab interactor 3 
CECR2                 0.011   cat eye syndrome chromosome region, candidate 2 [Ho...
CDX1                  0.010   caudal type homeobox 1 
ASXL3                 0.010   additional sex combs like 3 
ANKRD33B              0.010   PREDICTED: ankyrin repeat domain 33B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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