Guide to the Human Genome
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Name: SMN2 Sequence: fasta or formatted (250aa) NCBI GI: 13259531
Description:

survival of motor neuron 2, centromeric isoform c

Referenced in:

Capping and Splicing

Other entries for this name:
alt prot [294aa] survival of motor neuron 2, centromeric isoform d
alt prot [282aa] survival of motor neuron 2, centromeric isoform a
alt prot [262aa] survival of motor neuron 2, centromeric isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         18           2
 C cysteine            2.4          6           1
 D aspartate           7.2         18           2
 E glutamate           6.0         15           2
 F phenylalanine       1.6          4           1
 G glycine             8.0         20           3
 H histidine           0.8          2           1
 I isoleucine          5.6         14           2
 K lysine              8.0         20           2
 L leucine             5.2         13           2
 M methionine          2.8          7           1
 N asparagine          5.6         14           2
 P proline             9.2         23           5
 Q glutamine           3.6          9           2
 R arginine            2.8          7           2
 S serine             10.8         27           2
 T threonine           4.4         11           2
 V valine              3.6          9           3
 W tryptophan          2.0          5           1
 Y tyrosine            3.2          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   survival of motor neuron 2, centromeric isoform c [H... 
SMN2                  0.986   survival of motor neuron 2, centromeric isoform b [H...
SMN1                  0.986   survival of motor neuron 1, telomeric isoform b [Hom...
SMN2                  0.966   survival of motor neuron 2, centromeric isoform a [H...
SMN2                  0.952   survival of motor neuron 2, centromeric isoform d [H...
SMN1                  0.952   survival of motor neuron 1, telomeric isoform d [Homo...
SMNDC1                0.070   survival motor neuron domain containing 1 
TDRD3                 0.038   tudor domain containing 3 isoform 2 
TDRD3                 0.038   tudor domain containing 3 isoform 1 
TDRD3                 0.038   tudor domain containing 3 isoform 2 
CHD3                  0.036   chromodomain helicase DNA binding protein 3 isoform...
RXRB                  0.036   retinoid X receptor, beta 
FMNL1                 0.032   formin-like 1 
DIAPH1                0.030   diaphanous 1 isoform 2 
DIAPH1                0.030   diaphanous 1 isoform 1 
DIAPH2                0.030   diaphanous 2 isoform 12C 
DIAPH2                0.030   diaphanous 2 isoform 156 
KCNC3                 0.028   Shaw-related voltage-gated potassium channel protein...
PXK                   0.026   PX domain containing serine/threonine kinase 
MLL4                  0.026   myeloid/lymphoid or mixed-lineage leukemia 4 
EVL                   0.026   Enah/Vasp-like 
DAAM1                 0.026   dishevelled-associated activator of morphogenesis 1 ...
DIAPH3                0.026   diaphanous homolog 3 isoform b 
DIAPH3                0.026   diaphanous homolog 3 isoform a 
DHX37                 0.026   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
FMN2                  0.024   formin 2 
SH3BP2                0.022   SH3-domain binding protein 2 isoform b 
SH3BP2                0.022   SH3-domain binding protein 2 isoform c 
LOC646862             0.022   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.022   PREDICTED: hypothetical protein LOC646862 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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