Guide to the Human Genome
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Name: SMN2 Sequence: fasta or formatted (262aa) NCBI GI: 13259529
Description:

survival of motor neuron 2, centromeric isoform b

Referenced in:

Capping and Splicing

Other entries for this name:
alt prot [294aa] survival of motor neuron 2, centromeric isoform d
alt prot [282aa] survival of motor neuron 2, centromeric isoform a
alt prot [250aa] survival of motor neuron 2, centromeric isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         17           2
 C cysteine            2.7          7           1
 D aspartate           6.9         18           2
 E glutamate           5.7         15           2
 F phenylalanine       1.9          5           1
 G glycine             8.4         22           3
 H histidine           1.1          3           1
 I isoleucine          5.3         14           2
 K lysine              8.0         21           2
 L leucine             5.0         13           2
 M methionine          2.3          6           1
 N asparagine          6.1         16           2
 P proline             8.8         23           5
 Q glutamine           4.2         11           2
 R arginine            3.4          9           2
 S serine             11.1         29           2
 T threonine           4.2         11           2
 V valine              3.4          9           3
 W tryptophan          1.9          5           1
 Y tyrosine            3.1          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   survival of motor neuron 2, centromeric isoform b [H... 
SMN1                  1.000   survival of motor neuron 1, telomeric isoform b [Hom...
SMN2                  0.970   survival of motor neuron 2, centromeric isoform d [H...
SMN1                  0.970   survival of motor neuron 1, telomeric isoform d [Homo...
SMN2                  0.935   survival of motor neuron 2, centromeric isoform c [H...
SMN2                  0.903   survival of motor neuron 2, centromeric isoform a [H...
SMNDC1                0.067   survival motor neuron domain containing 1 
TDRD3                 0.036   tudor domain containing 3 isoform 2 
TDRD3                 0.036   tudor domain containing 3 isoform 1 
TDRD3                 0.036   tudor domain containing 3 isoform 2 
CHD3                  0.034   chromodomain helicase DNA binding protein 3 isoform...
RXRB                  0.034   retinoid X receptor, beta 
PXK                   0.030   PX domain containing serine/threonine kinase 
FMNL1                 0.030   formin-like 1 
DIAPH1                0.029   diaphanous 1 isoform 2 
DIAPH1                0.029   diaphanous 1 isoform 1 
DIAPH2                0.029   diaphanous 2 isoform 12C 
DIAPH2                0.029   diaphanous 2 isoform 156 
KCNC3                 0.027   Shaw-related voltage-gated potassium channel protein...
MLL4                  0.025   myeloid/lymphoid or mixed-lineage leukemia 4 
EVL                   0.025   Enah/Vasp-like 
DAAM1                 0.025   dishevelled-associated activator of morphogenesis 1 ...
DIAPH3                0.025   diaphanous homolog 3 isoform b 
DIAPH3                0.025   diaphanous homolog 3 isoform a 
DHX37                 0.025   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
FMN2                  0.023   formin 2 
SH3BP2                0.021   SH3-domain binding protein 2 isoform b 
SH3BP2                0.021   SH3-domain binding protein 2 isoform c 
LOC646862             0.021   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.021   PREDICTED: hypothetical protein LOC646862 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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