Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC646862 Sequence: fasta or formatted (329aa) NCBI GI: 169213453
Description:

PREDICTED: hypothetical protein LOC646862

Not currently referenced in the text

Other entries for this name:
alt mRNA {329aa} PREDICTED: hypothetical protein LOC646862
alt mRNA {329aa} PREDICTED: hypothetical protein LOC646862
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         38           2
 C cysteine            2.4          8           1
 D aspartate           3.6         12           1
 E glutamate           5.2         17           7
 F phenylalanine       3.0         10           2
 G glycine            10.0         33           3
 H histidine           0.9          3           1
 I isoleucine          1.2          4           1
 K lysine              0.9          3           1
 L leucine            10.3         34           2
 M methionine          0.3          1           1
 N asparagine          0.6          2           1
 P proline            18.2         60           6
 Q glutamine           1.8          6           1
 R arginine           10.3         34           3
 S serine              8.2         27           2
 T threonine           3.3         11           1
 V valine              4.6         15           2
 W tryptophan          2.7          9           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC646862 
LOC646862             1.000   PREDICTED: hypothetical protein LOC646862 
LOC646862             1.000   PREDICTED: hypothetical protein LOC646862 
LOC401934             0.120   PREDICTED: hypothetical protein 
LOC401934             0.120   PREDICTED: hypothetical protein 
LOC401934             0.119   PREDICTED: hypothetical protein 
RNF183                0.065   ring finger protein 183 
SYVN1                 0.047   synoviolin 1 isoform a 
SYVN1                 0.046   synoviolin 1 isoform b 
TRIM71                0.045   tripartite motif-containing 71 
HS3ST4                0.043   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
PCLO                  0.040   piccolo isoform 2 
PCLO                  0.040   piccolo isoform 1 
ZCCHC2                0.039   zinc finger, CCHC domain containing 2 
NACA                  0.037   nascent polypeptide-associated complex alpha subuni...
RANBP9                0.037   RAN binding protein 9 
RNF222                0.037   ring finger protein 222 
RNF222                0.037   PREDICTED: ring finger protein 222 
LMTK3                 0.037   lemur tyrosine kinase 3 
B4GALNT4              0.036   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
RNF222                0.036   PREDICTED: ring finger protein 222 
RNF222                0.036   PREDICTED: ring finger protein 222 
WASL                  0.034   Wiskott-Aldrich syndrome gene-like protein 
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
TRIM72                0.034   tripartite motif-containing 72 
TRIM32                0.034   tripartite motif-containing 32 
TRIM32                0.034   tripartite motif-containing 32 
RAPH1                 0.033   Ras association and pleckstrin homology domains 1 is...
PDCD7                 0.033   programmed cell death 7 
INF2                  0.033   inverted formin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press