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Search of human proteins with 40807366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40807366 PP3111 protein [Homo sapiens]
(473 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40807366 PP3111 protein [Homo sapiens] 983 0.0
gi|31742496 dihydrouridine synthase 4-like [Homo sapiens] 160 3e-39
gi|8923374 dihydrouridine synthase 2-like, SMM1 homolog [Homo sa... 108 1e-23
gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo sapi... 85 2e-16
gi|239788483 dihydrouridine synthase 3-like isoform 2 [Homo sapi... 85 2e-16
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 37 0.051
gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo sap... 35 0.15
gi|148746183 ubiquitin specific protease 35 [Homo sapiens] 35 0.19
gi|31377611 coiled-coil domain containing 148 [Homo sapiens] 34 0.33
gi|120659787 protein kinase D2 isoform B [Homo sapiens] 32 0.96
gi|120659785 protein kinase D2 isoform A [Homo sapiens] 32 0.96
gi|120659782 protein kinase D2 isoform A [Homo sapiens] 32 0.96
gi|19923468 protein kinase D2 isoform A [Homo sapiens] 32 0.96
gi|23397492 transmembrane protein 20 isoform 2 [Homo sapiens] 32 0.96
gi|148839382 ring finger protein 169 [Homo sapiens] 32 1.3
gi|24308303 SH3-binding domain protein 5-like [Homo sapiens] 32 1.3
gi|221219026 pleckstrin homology-like domain, family B, member 1... 32 1.6
gi|221219024 pleckstrin homology-like domain, family B, member 1... 32 1.6
gi|38424073 pleckstrin homology-like domain, family B, member 1 ... 32 1.6
gi|197927233 transmembrane protein 20 isoform 1 [Homo sapiens] 32 1.6
gi|157167158 zinc finger protein 808 [Homo sapiens] 31 2.1
gi|187936946 hypothetical protein LOC84140 [Homo sapiens] 31 2.8
gi|14150078 hypothetical protein LOC84273 [Homo sapiens] 31 2.8
gi|57863253 zinc finger protein 500 [Homo sapiens] 31 2.8
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ... 30 3.6
gi|40288193 XIAP associated factor 1 isoform 2 [Homo sapiens] 30 3.6
gi|40288191 XIAP associated factor 1 isoform 1 [Homo sapiens] 30 3.6
gi|62751964 YOD1 OTU deubiquinating enzyme 1 homolog [Homo sapiens] 30 3.6
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s... 30 3.6
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ... 30 3.6
>gi|40807366 PP3111 protein [Homo sapiens]
Length = 473
Score = 983 bits (2541), Expect = 0.0
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MPKLQGFEFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANY 60
MPKLQGFEFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANY
Sbjct: 1 MPKLQGFEFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANY 60
Query: 61 RKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGA 120
RKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGA
Sbjct: 61 RKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGA 120
Query: 121 FLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKE 180
FLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKE
Sbjct: 121 FLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKE 180
Query: 181 QKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPA 240
QKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPA
Sbjct: 181 QKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPA 240
Query: 241 LFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEG 300
LFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEG
Sbjct: 241 LFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEG 300
Query: 301 IAAVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEE 360
IAAVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEE
Sbjct: 301 IAAVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEE 360
Query: 361 EEGGTEVLSKNKQKKQLRNPHKTFDPSLKPKYAKCDQCGNPKGNRCVFSLCRGCCKKRAS 420
EEGGTEVLSKNKQKKQLRNPHKTFDPSLKPKYAKCDQCGNPKGNRCVFSLCRGCCKKRAS
Sbjct: 361 EEGGTEVLSKNKQKKQLRNPHKTFDPSLKPKYAKCDQCGNPKGNRCVFSLCRGCCKKRAS 420
Query: 421 KETADCPGHGLLFKTKLEKSLAWKEAQPELQEPQPAAPGTPGGFSEVMGSALA 473
KETADCPGHGLLFKTKLEKSLAWKEAQPELQEPQPAAPGTPGGFSEVMGSALA
Sbjct: 421 KETADCPGHGLLFKTKLEKSLAWKEAQPELQEPQPAAPGTPGGFSEVMGSALA 473
>gi|31742496 dihydrouridine synthase 4-like [Homo sapiens]
Length = 317
Score = 160 bits (404), Expect = 3e-39
Identities = 97/258 (37%), Positives = 138/258 (53%), Gaps = 8/258 (3%)
Query: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQ 79
V APMV S+LA+R L R++ LCYTPM+ A FV+ R D PLIVQ
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTN--QGDCPLIVQ 87
Query: 80 FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEK 139
F AND + AA + Y + ID+N GCPQ A YGA L ++ +L+Q M+ +
Sbjct: 88 FAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQ 147
Query: 140 LSVP---VTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKA 196
+ P V+ KIR+ ++ +TV Q E G +TVHGRT E++ ++ IK
Sbjct: 148 VETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQ---PVHYDSIKI 204
Query: 197 VRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEY 256
+++ ++IPV ANG+I+ L++ E R TG GVM A G L NPA+F G + ++
Sbjct: 205 IKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDW 264
Query: 257 LDIVREHPCPLSYVRAHL 274
+DI E P HL
Sbjct: 265 VDIALELGTPYMCFHQHL 282
>gi|8923374 dihydrouridine synthase 2-like, SMM1 homolog [Homo
sapiens]
Length = 493
Score = 108 bits (269), Expect = 1e-23
Identities = 77/257 (29%), Positives = 128/257 (49%), Gaps = 22/257 (8%)
Query: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCE--VCPEDRPL- 76
++APMV L RLL+ +GA + Y L ++ E L V P+DR +
Sbjct: 15 ILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRVVF 74
Query: 77 ----------IVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEW 126
+ Q +D E + A L ++ ID+N+GCP+ + +G GA L +
Sbjct: 75 RTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDP 134
Query: 127 DLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLS 186
D +++++ + PVTCKIR+ P ++ T+ + +E+ G + VHGR +E++
Sbjct: 135 DKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERP--Q 192
Query: 187 GAASWEHIKAVRKAVAIPVFANG----NIQCLQDVERCLRDTGVQGVMSAEGNLHNPALF 242
S E IKA+ ++IPV ANG +IQ D+E + T VM A + NP++F
Sbjct: 193 HPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIF 252
Query: 243 --EGRSPAVWELAEEYL 257
EG P + E+ ++Y+
Sbjct: 253 LKEGLRP-LEEVMQKYI 268
>gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
sapiens]
Length = 650
Score = 84.7 bits (208), Expect = 2e-16
Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 100 DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIR--VFPEIDK 156
D +D+N+GCP ++ K+G G L + Q+++ ++ L VP+T KIR V ++
Sbjct: 388 DFVDINVGCPIDLVYKKGG-GCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNL 446
Query: 157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRKAVAIPVFANGNIQCLQ 215
R L G L+T+HGR++EQ+ + A W++I + V+ A +P+F NG+I +
Sbjct: 447 AHRLLPELRDWGVALVTLHGRSREQR--YTKLADWQYIEECVQAASPMPLFGNGDILSFE 504
Query: 216 DVERCLRDTGVQGVMSAEGNLHNPALF-EGRSPAVWEL-AEEYLDIVRE 262
D R ++ TGV G+M A G L P LF E + W++ + E LDI+R+
Sbjct: 505 DANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRD 552
>gi|239788483 dihydrouridine synthase 3-like isoform 2 [Homo
sapiens]
Length = 408
Score = 84.7 bits (208), Expect = 2e-16
Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 100 DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIR--VFPEIDK 156
D +D+N+GCP ++ K+G G L + Q+++ ++ L VP+T KIR V ++
Sbjct: 146 DFVDINVGCPIDLVYKKGG-GCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNL 204
Query: 157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRKAVAIPVFANGNIQCLQ 215
R L G L+T+HGR++EQ+ + A W++I + V+ A +P+F NG+I +
Sbjct: 205 AHRLLPELRDWGVALVTLHGRSREQR--YTKLADWQYIEECVQAASPMPLFGNGDILSFE 262
Query: 216 DVERCLRDTGVQGVMSAEGNLHNPALF-EGRSPAVWEL-AEEYLDIVRE 262
D R ++ TGV G+M A G L P LF E + W++ + E LDI+R+
Sbjct: 263 DANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRD 310
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 36.6 bits (83), Expect = 0.051
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 284 VHQELREELAKVKTLEGIAAVSQELKLR---CQEEISRQEGAKPTGDLPFHWICQPYIRP 340
V ++L+E+ + + EG+ A +++ +L+ +E + G P LP P I
Sbjct: 1704 VRRKLKEKQKQKE--EGLQASAEKAELKKGSSEESLGEDPGLAPE-PLPTVKATSPLIEE 1760
Query: 341 GPREGSKEKAGARSKRALEEEEGGTE--VLSKNKQ---KKQLRNPHKTFDPSLK 389
P K+K A KR +E++G ++ + K K+ KK PH PSLK
Sbjct: 1761 TPIGSIKDKVKALQKRVEDEQKGRSKLPIRVKGKEDVPKKTTHRPHPAASPSLK 1814
>gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo
sapiens]
Length = 1025
Score = 35.0 bits (79), Expect = 0.15
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 71 PEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
P++ + C+ + + + A ++D DA++LNL CP + +RG A QD +L+
Sbjct: 633 PDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDP-ELV 691
Query: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
+ + + + +P K+ P + V A+ ++ G +T G S
Sbjct: 692 RNICRWVRQAVQIPFFAKLT--PNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGT 749
Query: 190 SWEHIKAVRK 199
W + ++
Sbjct: 750 PWPAVGIAKR 759
>gi|148746183 ubiquitin specific protease 35 [Homo sapiens]
Length = 1018
Score = 34.7 bits (78), Expect = 0.19
Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 315 EISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEEGGTEVLSKNKQK 374
E S++ P L W P+ PG ++ E R EEE+ GT + K KQ
Sbjct: 492 EHSQRPAISPENFLSASWT--PWFSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLKQS 549
Query: 375 KQLRNPHKTFDPSLKPKYAKCDQCGNPKGNRCVFSLCRGCCKKRASKETA 424
P + PS G + V +C CC +S+E A
Sbjct: 550 SSPSPPEEPPAPS-------STSVEKMFGGKIVTRICCLCCLNVSSREEA 592
>gi|31377611 coiled-coil domain containing 148 [Homo sapiens]
Length = 591
Score = 33.9 bits (76), Expect = 0.33
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 219 RCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLW 278
RC ++ ++ +++ E N+ N L + + EL+E+ ++ P+ +RA L
Sbjct: 84 RCKMESEIKSLLNEE-NIGNECLCD-LTNFEQELSEQQCTYLKNVINPIQQLRADLKYRQ 141
Query: 279 HHTLQVHQELREELAKVKTLEGIAAVSQELK 309
HHTLQ H E +K LE + V ++LK
Sbjct: 142 HHTLQ-HSHPHIEFNSMKVLEEVDFVKKQLK 171
>gi|120659787 protein kinase D2 isoform B [Homo sapiens]
Length = 721
Score = 32.3 bits (72), Expect = 0.96
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 394 KCDQCGNPKGNRCVFSLCRGC--CKKRASKETADCPGHGLLFKTKLEKSLAWKEAQPELQ 451
KCD CG RC FS+ C +KR T+ GH + T +E
Sbjct: 11 KCDGCGLNYHKRCAFSIPNNCSGARKRRLSSTSLASGHSVRLGTSESLPCTAEELSRSTT 70
Query: 452 EPQPAAP 458
E P P
Sbjct: 71 ELLPRRP 77
>gi|120659785 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 32.3 bits (72), Expect = 0.96
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 394 KCDQCGNPKGNRCVFSLCRGC--CKKRASKETADCPGHGLLFKTKLEKSLAWKEAQPELQ 451
KCD CG RC FS+ C +KR T+ GH + T +E
Sbjct: 168 KCDGCGLNYHKRCAFSIPNNCSGARKRRLSSTSLASGHSVRLGTSESLPCTAEELSRSTT 227
Query: 452 EPQPAAP 458
E P P
Sbjct: 228 ELLPRRP 234
>gi|120659782 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 32.3 bits (72), Expect = 0.96
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 394 KCDQCGNPKGNRCVFSLCRGC--CKKRASKETADCPGHGLLFKTKLEKSLAWKEAQPELQ 451
KCD CG RC FS+ C +KR T+ GH + T +E
Sbjct: 168 KCDGCGLNYHKRCAFSIPNNCSGARKRRLSSTSLASGHSVRLGTSESLPCTAEELSRSTT 227
Query: 452 EPQPAAP 458
E P P
Sbjct: 228 ELLPRRP 234
>gi|19923468 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 32.3 bits (72), Expect = 0.96
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 394 KCDQCGNPKGNRCVFSLCRGC--CKKRASKETADCPGHGLLFKTKLEKSLAWKEAQPELQ 451
KCD CG RC FS+ C +KR T+ GH + T +E
Sbjct: 168 KCDGCGLNYHKRCAFSIPNNCSGARKRRLSSTSLASGHSVRLGTSESLPCTAEELSRSTT 227
Query: 452 EPQPAAP 458
E P P
Sbjct: 228 ELLPRRP 234
>gi|23397492 transmembrane protein 20 isoform 2 [Homo sapiens]
Length = 364
Score = 32.3 bits (72), Expect = 0.96
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 386 PSLKPKYAKCDQCGNPKGNRCVFSLCRGCCKK-RASKETADCPGHGLLF 433
P + A + G P RC L CC + +K+ A CPG GL +
Sbjct: 25 PGATEEPAAAEAAGAPDRGRCWLCLSSPCCSRTEPAKKKAPCPGLGLFY 73
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 32.0 bits (71), Expect = 1.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 389 KPKYAKCDQCGNPKGNR----CVFSLCRGCCKKRASKETADCP 427
+P+ + C C P G C SLCRGC ++ A CP
Sbjct: 62 RPEESGCAGCLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCP 104
>gi|24308303 SH3-binding domain protein 5-like [Homo sapiens]
Length = 393
Score = 32.0 bits (71), Expect = 1.3
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 33/123 (26%)
Query: 244 GRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGIAA 303
G+S +EL ++ I+ EH ++ EL +++A+ KT +A
Sbjct: 220 GKSRPYFELKAQFSQILEEHKAKVT------------------ELEQQVAQAKTRYSVA- 260
Query: 304 VSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEEG 363
LR E+IS Q A+ G LP H + GPR S A A +E+ +
Sbjct: 261 ------LRNLEQISEQIHARRRGGLPPHPL-------GPRRSSPVGAEA-GPEDMEDGDS 306
Query: 364 GTE 366
G E
Sbjct: 307 GIE 309
>gi|221219026 pleckstrin homology-like domain, family B, member 1
isoform b [Homo sapiens]
Length = 1319
Score = 31.6 bits (70), Expect = 1.6
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 282 LQVHQELREELAKVKTLEGIAAVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPG 341
L+ H+ R+E + + +E + E L E SR +G G+LP +
Sbjct: 590 LEYHRRQRQERLREQEMERLERQRLETILNLCAEYSRADGGPEAGELPSIGEATAALALA 649
Query: 342 PREGSKEKAGARSKRALEEEEGGTEVLSKNKQKKQLRN 379
R S+ AGA S R+ EE T+ L ++ ++ N
Sbjct: 650 GRRPSRGLAGA-SGRSSEEPGVATQRLWESMERSDEEN 686
>gi|221219024 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 31.6 bits (70), Expect = 1.6
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 282 LQVHQELREELAKVKTLEGIAAVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPG 341
L+ H+ R+E + + +E + E L E SR +G G+LP +
Sbjct: 590 LEYHRRQRQERLREQEMERLERQRLETILNLCAEYSRADGGPEAGELPSIGEATAALALA 649
Query: 342 PREGSKEKAGARSKRALEEEEGGTEVLSKNKQKKQLRN 379
R S+ AGA S R+ EE T+ L ++ ++ N
Sbjct: 650 GRRPSRGLAGA-SGRSSEEPGVATQRLWESMERSDEEN 686
>gi|38424073 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 31.6 bits (70), Expect = 1.6
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 282 LQVHQELREELAKVKTLEGIAAVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPG 341
L+ H+ R+E + + +E + E L E SR +G G+LP +
Sbjct: 590 LEYHRRQRQERLREQEMERLERQRLETILNLCAEYSRADGGPEAGELPSIGEATAALALA 649
Query: 342 PREGSKEKAGARSKRALEEEEGGTEVLSKNKQKKQLRN 379
R S+ AGA S R+ EE T+ L ++ ++ N
Sbjct: 650 GRRPSRGLAGA-SGRSSEEPGVATQRLWESMERSDEEN 686
>gi|197927233 transmembrane protein 20 isoform 1 [Homo sapiens]
Length = 365
Score = 31.6 bits (70), Expect = 1.6
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 386 PSLKPKYAKCDQCGNPKGNRCVFSLCRGCCKKR--ASKETADCPGHGLLF 433
P + A + G P RC L CC + +K+ A CPG GL +
Sbjct: 25 PGATEEPAAAEAAGAPDRGRCWLCLSSPCCSRTEPEAKKKAPCPGLGLFY 74
>gi|157167158 zinc finger protein 808 [Homo sapiens]
Length = 903
Score = 31.2 bits (69), Expect = 2.1
Identities = 40/168 (23%), Positives = 59/168 (35%), Gaps = 29/168 (17%)
Query: 272 AHLFKLWHHTLQVHQELREELAKVKTLEGIAAVSQELKLRCQEEISRQEGAKPTGD--LP 329
+HL +L H Q+ E+ +L K + + SQ + R Q IS G P LP
Sbjct: 162 SHLPEL--HIFQIKGEIANQLEKSTSDASSVSTSQRISCRPQIHISNNYGNNPLNSSLLP 219
Query: 330 FHWICQPYIRPGPREGSKEKAGARSKRALEEEEGGTEVLSKNKQKKQLRNPHKTFDPSLK 389
K++ R K E G S +K Q+ P L
Sbjct: 220 ----------------QKQEVHMREKSFPCNESGKAFNCSSLLRKHQI--------PHLG 255
Query: 390 PKYAKCDQCGNPKGNRCVFSLCRGCCKKRASKETADCPGHGLLFKTKL 437
K KCD CG ++ + R C + +C G +K+ L
Sbjct: 256 DKQYKCDVCGKLFNHKQYLACHRRCHTGEKPYKCKEC-GKSFSYKSSL 302
>gi|187936946 hypothetical protein LOC84140 [Homo sapiens]
Length = 660
Score = 30.8 bits (68), Expect = 2.8
Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 21/173 (12%)
Query: 255 EYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGIAAVSQELKLRCQE 314
EY R +P P S +F +H L +E R K K+ E + A + K +E
Sbjct: 277 EYKKKFRANPVPAS-----VFLPLYHDLVKQKEERRRSLKEKSKEALLASQKPFKFIARE 331
Query: 315 EISRQEGAKPTGD-LPFHWICQPY-IRPGPREGSKEKAGARSKRALEEEEGGTEVLSKNK 372
E R K D L + + RP PR G+ + L+EEE L +N
Sbjct: 332 EQKRAAREKQLRDFLKYKKKTNRFKARPIPR----STYGSTTNDKLKEEE-----LYRN- 381
Query: 373 QKKQLRNPHKTFDPSLKPKYAKCDQCGNPKGNRCVFSLCRGCCKKRASKETAD 425
+ QLR + S P + C C NP RC + CK + T D
Sbjct: 382 LRTQLRAQEHLQNSSPLPCRSACG-CRNP---RCPEQAVKLKCKHKVRCPTPD 430
>gi|14150078 hypothetical protein LOC84273 [Homo sapiens]
Length = 698
Score = 30.8 bits (68), Expect = 2.8
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 320 EGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEEGGTEVLSKNKQKKQLRN 379
EG GD+ ++ YI + ++EK ++ EEEE + + ++++ LR
Sbjct: 60 EGFGEGGDMQERFLFPEYILDPEPQPTREKQLQELQQQQEEEERQRQQRREERRQQNLRA 119
Query: 380 PHKTF------DPSLKPKYAKCDQCG 399
+ DP+L P C CG
Sbjct: 120 RSREHPVVGHPDPALPPSGVNCSGCG 145
>gi|57863253 zinc finger protein 500 [Homo sapiens]
Length = 480
Score = 30.8 bits (68), Expect = 2.8
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 395 CDQCGNPKGNRCVFSLCRGCCKKRASKETADCPGHGLLFK--TKLEKSLAWKEAQPELQE 452
C QCG N FS R + ++ CP G F+ T L K L
Sbjct: 411 CTQCGKRFNNSSHFSAHR---RTHTGEKPYTCPACGRGFRRGTDLHKHQRTHMGAGSLPT 467
Query: 453 PQPAAPGTPG 462
QP APG PG
Sbjct: 468 LQPVAPGGPG 477
>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
Length = 287
Score = 30.4 bits (67), Expect = 3.6
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 303 AVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEE 362
+ S ++L+C+E ++ A TGD YI G E E+ G++ + A+ +E
Sbjct: 121 STSDSVRLKCREMLA---AALRTGD--------DYIAIGADE---EELGSQIEEAIYQEI 166
Query: 363 GGTEVLSKNKQKKQLRNPHKTFDPSLKPKYAKCDQCGN 400
T++ KN+ + ++ N +P+L+ K CGN
Sbjct: 167 RNTDMKYKNRVRSRISNLKDAKNPNLR----KNVLCGN 200
>gi|40288193 XIAP associated factor 1 isoform 2 [Homo sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 3.6
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 277 LWHHTLQVHQEL-REELAKVKTLEGIAAVSQELKLR-CQEEISRQE------GAKPTGDL 328
+ H L H+++ R E A++ E I+A +E+ C + I + P +
Sbjct: 100 IMHRMLAQHRDVCRSEQAQLGKGERISAPEREIYCHYCNQMIPENKYFHHMGKCCPDSEF 159
Query: 329 PFHW-ICQPYIRPG--PREGSKEKAGARSK--RALEEEEGGTEVLSKNKQKKQLRNPHKT 383
H+ + P I P P + ++ + K R + S++ KK R+ +KT
Sbjct: 160 KKHFPVGNPEILPSSLPSQAAENQTSTMEKDVRPKTRSINRFPLHSESSSKKAPRSKNKT 219
Query: 384 FDPSL--KPKYAKCDQCGNPKGNRCVFSLCRGC 414
DP L +PK + +P+G++ + + R C
Sbjct: 220 LDPLLMSEPK----PRTSSPRGDKAAYDILRRC 248
>gi|40288191 XIAP associated factor 1 isoform 1 [Homo sapiens]
Length = 301
Score = 30.4 bits (67), Expect = 3.6
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 277 LWHHTLQVHQEL-REELAKVKTLEGIAAVSQELKLR-CQEEISRQE------GAKPTGDL 328
+ H L H+++ R E A++ E I+A +E+ C + I + P +
Sbjct: 119 IMHRMLAQHRDVCRSEQAQLGKGERISAPEREIYCHYCNQMIPENKYFHHMGKCCPDSEF 178
Query: 329 PFHW-ICQPYIRPG--PREGSKEKAGARSK--RALEEEEGGTEVLSKNKQKKQLRNPHKT 383
H+ + P I P P + ++ + K R + S++ KK R+ +KT
Sbjct: 179 KKHFPVGNPEILPSSLPSQAAENQTSTMEKDVRPKTRSINRFPLHSESSSKKAPRSKNKT 238
Query: 384 FDPSL--KPKYAKCDQCGNPKGNRCVFSLCRGC 414
DP L +PK + +P+G++ + + R C
Sbjct: 239 LDPLLMSEPK----PRTSSPRGDKAAYDILRRC 267
>gi|62751964 YOD1 OTU deubiquinating enzyme 1 homolog [Homo sapiens]
Length = 348
Score = 30.4 bits (67), Expect = 3.6
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 71 PEDRPLIVQFCANDPEVFVQAAL--LAQDYCDAI 102
PE R LI Q A+DP+ + +A L Q+YCD I
Sbjct: 180 PEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWI 213
>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
Length = 301
Score = 30.4 bits (67), Expect = 3.6
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 303 AVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEE 362
+ S ++L+C+E ++ A TGD YI G E E+ G++ + A+ +E
Sbjct: 135 STSDSVRLKCREMLA---AALRTGD--------DYIAIGADE---EELGSQIEEAIYQEI 180
Query: 363 GGTEVLSKNKQKKQLRNPHKTFDPSLKPKYAKCDQCGN 400
T++ KN+ + ++ N +P+L+ K CGN
Sbjct: 181 RNTDMKYKNRVRSRISNLKDAKNPNLR----KNVLCGN 214
>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
sapiens]
Length = 280
Score = 30.4 bits (67), Expect = 3.6
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 303 AVSQELKLRCQEEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEE 362
+ S ++L+C+E ++ A TGD YI G E E+ G++ + A+ +E
Sbjct: 114 STSDSVRLKCREMLA---AALRTGD--------DYIAIGADE---EELGSQIEEAIYQEI 159
Query: 363 GGTEVLSKNKQKKQLRNPHKTFDPSLKPKYAKCDQCGN 400
T++ KN+ + ++ N +P+L+ K CGN
Sbjct: 160 RNTDMKYKNRVRSRISNLKDAKNPNLR----KNVLCGN 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,909,097
Number of Sequences: 37866
Number of extensions: 1025302
Number of successful extensions: 3481
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 3453
Number of HSP's gapped (non-prelim): 63
length of query: 473
length of database: 18,247,518
effective HSP length: 106
effective length of query: 367
effective length of database: 14,233,722
effective search space: 5223775974
effective search space used: 5223775974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.