Guide to the Human Genome
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Name: PHLDB1 Sequence: fasta or formatted (1319aa) NCBI GI: 221219026
Description:

pleckstrin homology-like domain, family B, member 1 isoform b

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [1377aa] pleckstrin homology-like domain, family B, member 1 isoform a
alt prot [1377aa] pleckstrin homology-like domain, family B, member 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3        109           3
 C cysteine            1.3         17           1
 D aspartate           3.0         40           2
 E glutamate           9.6        127           3
 F phenylalanine       1.5         20           1
 G glycine             7.4         97           2
 H histidine           2.0         27           2
 I isoleucine          2.5         33           1
 K lysine              4.7         62           2
 L leucine            11.1        147           2
 M methionine          2.0         27           1
 N asparagine          1.7         23           1
 P proline             7.9        104           2
 Q glutamine           5.4         71           2
 R arginine            8.9        118           4
 S serine             10.9        144           6
 T threonine           5.4         71           2
 V valine              3.9         52           2
 W tryptophan          0.5          7           1
 Y tyrosine            1.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pleckstrin homology-like domain, family B, member 1... 
PHLDB1                0.988   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.988   pleckstrin homology-like domain, family B, member 1 ...
PHLDB2                0.246   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.246   pleckstrin homology-like domain, family B, member 2 ...
PHLDB2                0.238   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.238   pleckstrin homology-like domain, family B, member 2...
PHLDB3                0.087   pleckstrin homology-like domain, family B, member 3...
KIF16B                0.029   kinesin-like motor protein C20orf23 
MYH10                 0.021   myosin, heavy polypeptide 10, non-muscle 
NUMA1                 0.021   nuclear mitotic apparatus protein 1 
CALD1                 0.020   caldesmon 1 isoform 1 
PLEC1                 0.020   plectin 1 isoform 11 
PLEC1                 0.020   plectin 1 isoform 10 
PLEC1                 0.020   plectin 1 isoform 8 
PLEC1                 0.020   plectin 1 isoform 7 
PLEC1                 0.020   plectin 1 isoform 6 
PLEC1                 0.020   plectin 1 isoform 3 
PLEC1                 0.020   plectin 1 isoform 2 
PLEC1                 0.020   plectin 1 isoform 1 
POLR2A                0.020   DNA-directed RNA polymerase II A 
TCHH                  0.020   trichohyalin 
FLJ22184              0.019   PREDICTED: hypothetical protein LOC80164 
CEP250                0.018   centrosomal protein 2 
MYH14                 0.018   myosin, heavy chain 14 isoform 1 
MYH14                 0.018   myosin, heavy chain 14 isoform 2 
MYH14                 0.018   myosin, heavy chain 14 isoform 3 
EEA1                  0.018   early endosome antigen 1, 162kD 
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
DEF6                  0.018   differentially expressed in FDCP 6 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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