Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C4orf14 Sequence: fasta or formatted (698aa) NCBI GI: 14150078
Description:

hypothetical protein LOC84273

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         48           3
 C cysteine            1.4         10           1
 D aspartate           5.2         36           1
 E glutamate           6.7         47           4
 F phenylalanine       3.2         22           1
 G glycine             7.2         50           2
 H histidine           2.3         16           2
 I isoleucine          3.3         23           1
 K lysine              5.2         36           3
 L leucine            12.2         85           3
 M methionine          1.6         11           1
 N asparagine          3.3         23           1
 P proline             7.7         54           2
 Q glutamine           5.6         39           4
 R arginine            8.0         56           2
 S serine              5.3         37           3
 T threonine           4.7         33           2
 V valine              6.4         45           2
 W tryptophan          1.1          8           1
 Y tyrosine            2.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84273 
ANKZF1                0.012   ankyrin repeat and zinc finger domain containing 1 ...
ANKZF1                0.012   ankyrin repeat and zinc finger domain containing 1 ...
FOXP2                 0.012   forkhead box P2 isoform I 
FOXP2                 0.012   forkhead box P2 isoform III 
FOXP2                 0.012   forkhead box P2 isoform II 
ZC3H18                0.012   zinc finger CCCH-type containing 18 
NCOA6                 0.012   nuclear receptor coactivator 6 
KIAA0182              0.011   genetic suppressor element 1 isoform 2 
KIAA0182              0.011   genetic suppressor element 1 isoform 1 
RBM25                 0.011   RNA binding motif protein 25 
FAM155A               0.010   family with sequence similarity 155, member A [Homo...
CROP                  0.010   cisplatin resistance-associated overexpressed protei...
CROP                  0.010   cisplatin resistance-associated overexpressed protei...
TCHH                  0.010   trichohyalin 
MED12                 0.010   mediator complex subunit 12 
TBP                   0.009   TATA box binding protein 
MN1                   0.009   meningioma  1 
AP1GBP1               0.009   AP1 gamma subunit binding protein 1 isoform 2 
AP1GBP1               0.009   AP1 gamma subunit binding protein 1 isoform 1 
NCOA3                 0.009   nuclear receptor coactivator 3 isoform a 
MAML3                 0.009   mastermind-like 3 
DENND4B               0.009   DENN/MADD domain containing 4B 
MAML2                 0.009   mastermind-like 2 
GRAMD4                0.009   death-inducing-protein 
GNL3L                 0.009   guanine nucleotide binding protein-like 3 (nucleolar)...
ATXN1                 0.009   ataxin 1 
ATXN1                 0.009   ataxin 1 
MYO10                 0.009   myosin X 
ASPSCR1               0.009   alveolar soft part sarcoma chromosome region, candid...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press