Guide to the Human Genome
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Name: PRKD2 Sequence: fasta or formatted (878aa) NCBI GI: 120659782
Description:

protein kinase D2 isoform A

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt mRNA [878aa] protein kinase D2 isoform A
alt prot [721aa] protein kinase D2 isoform B
alt mRNA [878aa] protein kinase D2 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         59           2
 C cysteine            2.6         23           1
 D aspartate           4.6         40           2
 E glutamate           6.5         57           4
 F phenylalanine       3.8         33           1
 G glycine             7.5         66           2
 H histidine           3.4         30           1
 I isoleucine          4.6         40           2
 K lysine              4.6         40           2
 L leucine            10.4         91           2
 M methionine          2.1         18           1
 N asparagine          3.2         28           2
 P proline             7.1         62           4
 Q glutamine           4.3         38           1
 R arginine            5.5         48           2
 S serine              9.1         80           7
 T threonine           4.7         41           2
 V valine              6.2         54           2
 W tryptophan          0.9          8           1
 Y tyrosine            2.5         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase D2 isoform A 
PRKD2                 1.000   protein kinase D2 isoform A 
PRKD2                 1.000   protein kinase D2 isoform A 
PRKD2                 0.818   protein kinase D2 isoform B 
PRKD1                 0.674   protein kinase D1 
PRKD3                 0.619   protein kinase D3 
CHEK2                 0.091   protein kinase CHK2 isoform c 
CHEK2                 0.091   protein kinase CHK2 isoform a 
DCLK3                 0.088   doublecortin-like kinase 3 
CAMK1D                0.087   calcium/calmodulin-dependent protein kinase ID isofor...
CAMK1D                0.087   calcium/calmodulin-dependent protein kinase ID isofo...
DCLK2                 0.083   doublecortin-like kinase 2 isoform b 
DCLK2                 0.083   doublecortin-like kinase 2 isoform a 
CAMK1G                0.083   calcium/calmodulin-dependent protein kinase IG [Homo...
CAMK1                 0.083   calcium/calmodulin-dependent protein kinase I 
CAMK4                 0.080   calcium/calmodulin-dependent protein kinase IV 
PNCK                  0.078   pregnancy upregulated non-ubiquitously expressed Ca...
STK17A                0.078   serine/threonine kinase 17a 
CAMK2D                0.076   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.076   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.076   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.076   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.076   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.076   calcium/calmodulin-dependent protein kinase II delta...
PNCK                  0.076   pregnancy upregulated non-ubiquitously expressed Ca...
DCLK1                 0.075   doublecortin-like kinase 1 
CASK                  0.074   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.074   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.074   calcium/calmodulin-dependent serine protein kinase ...
PSKH1                 0.074   protein serine kinase H1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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