Guide to the Human Genome
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Name: ZNF500 Sequence: fasta or formatted (480aa) NCBI GI: 57863253
Description:

zinc finger protein 500

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         28           1
 C cysteine            3.3         16           2
 D aspartate           3.3         16           2
 E glutamate          10.0         48           3
 F phenylalanine       3.1         15           1
 G glycine             9.0         43           2
 H histidine           4.0         19           1
 I isoleucine          1.5          7           1
 K lysine              3.5         17           1
 L leucine             9.4         45           2
 M methionine          1.0          5           1
 N asparagine          1.0          5           2
 P proline            10.6         51           3
 Q glutamine           6.7         32           2
 R arginine            9.4         45           2
 S serine              6.5         31           3
 T threonine           4.4         21           1
 V valine              4.8         23           2
 W tryptophan          1.0          5           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 500 
ZNF213                0.295   zinc finger protein 213 
ZNF213                0.295   zinc finger protein 213 
ZNF263                0.292   zinc finger protein 263 
ZNF192                0.289   zinc finger protein 192 
ZNF498                0.277   zinc finger and SCAN domain containing 25 
ZKSCAN4               0.264   zinc finger with KRAB and SCAN domains 4 
ZSCAN29               0.204   zinc finger protein 690 
ZNF853                0.201   zinc finger protein 853 
PRDM9                 0.189   PR domain containing 9 
ZNF436                0.188   zinc finger protein 436 
ZNF436                0.188   zinc finger protein 436 
ZKSCAN2               0.186   zinc finger with KRAB and SCAN domains 2 
ZNF434                0.185   zinc finger protein 434 
ZNF329                0.184   zinc finger protein 329 
ZSCAN2                0.183   zinc finger protein 29 isoform 1 
ZNF616                0.182   zinc finger protein 616 
ZNF572                0.182   zinc finger protein 572 
ZFP2                  0.180   zinc finger protein 2 homolog 
ZNF774                0.180   zinc finger protein 774 
ZNF182                0.180   zinc finger protein 21 isoform 2 
ZNF182                0.180   zinc finger protein 21 isoform 1 
ZNF229                0.178   zinc finger protein 229 
ZNF135                0.178   zinc finger protein 135 
ZNF782                0.177   zinc finger protein 782 
ZSCAN20               0.177   zinc finger protein 31 
ZNF211                0.176   zinc finger protein 211 isoform 2 
ZNF211                0.176   zinc finger protein 211 isoform 1 
ZNF214                0.176   zinc finger protein 214 
ZNF71                 0.176   zinc finger protein 71 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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