Guide to the Human Genome
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Name: PHLDB1 Sequence: fasta or formatted (1377aa) NCBI GI: 221219024
Description:

pleckstrin homology-like domain, family B, member 1 isoform a

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [1319aa] pleckstrin homology-like domain, family B, member 1 isoform b
alt mRNA [1377aa] pleckstrin homology-like domain, family B, member 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4        116           3
 C cysteine            1.2         17           1
 D aspartate           3.0         41           2
 E glutamate           9.5        131           3
 F phenylalanine       1.7         23           2
 G glycine             7.3        100           2
 H histidine           2.0         28           2
 I isoleucine          2.4         33           1
 K lysine              4.7         65           2
 L leucine            11.3        155           3
 M methionine          2.2         30           1
 N asparagine          1.7         23           1
 P proline             8.1        111           3
 Q glutamine           5.4         75           2
 R arginine            8.8        121           4
 S serine             10.7        148           6
 T threonine           5.4         74           2
 V valine              3.9         54           2
 W tryptophan          0.6          8           1
 Y tyrosine            1.7         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pleckstrin homology-like domain, family B, member 1... 
PHLDB1                1.000   pleckstrin homology-like domain, family B, member 1 ...
PHLDB1                0.940   pleckstrin homology-like domain, family B, member 1...
PHLDB2                0.233   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.233   pleckstrin homology-like domain, family B, member 2 ...
PHLDB2                0.226   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.226   pleckstrin homology-like domain, family B, member 2...
PHLDB3                0.067   pleckstrin homology-like domain, family B, member 3...
KIF16B                0.028   kinesin-like motor protein C20orf23 
POLR2A                0.019   DNA-directed RNA polymerase II A 
TCHH                  0.019   trichohyalin 
MYH10                 0.019   myosin, heavy polypeptide 10, non-muscle 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
NUMA1                 0.018   nuclear mitotic apparatus protein 1 
PLEC1                 0.018   plectin 1 isoform 11 
PLEC1                 0.018   plectin 1 isoform 10 
PLEC1                 0.018   plectin 1 isoform 8 
PLEC1                 0.018   plectin 1 isoform 7 
PLEC1                 0.018   plectin 1 isoform 6 
PLEC1                 0.018   plectin 1 isoform 3 
PLEC1                 0.018   plectin 1 isoform 2 
PLEC1                 0.018   plectin 1 isoform 1 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
DEF6                  0.017   differentially expressed in FDCP 6 homolog 
CROCC                 0.017   ciliary rootlet coiled-coil 
MYH14                 0.016   myosin, heavy chain 14 isoform 1 
MYH14                 0.016   myosin, heavy chain 14 isoform 2 
MYH14                 0.016   myosin, heavy chain 14 isoform 3 
FBF1                  0.016   Fas (TNFRSF6) binding factor 1 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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