Search of human proteins with 40538732

Search of human proteins with 40538732

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo
sapiens]
         (517 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo sa...  1048   0.0  
gi|38454188 RNA binding motif protein 41 [Homo sapiens]                96   6e-20
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s...    50   5e-06
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]      49   8e-06
gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Hom...    49   8e-06
gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo...    49   8e-06
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      48   2e-05
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     45   1e-04
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s...    44   4e-04
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    44   5e-04
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    44   5e-04
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    44   5e-04
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s...    44   5e-04
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]       43   6e-04
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]      43   6e-04
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]    43   8e-04
gi|109240550 paraspeckle protein 1 [Homo sapiens]                      42   0.001
gi|13027642 small nuclear ribonucleoprotein 35kDa (U11/U12) isof...    42   0.001
gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12) isof...    42   0.001
gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isof...    42   0.001
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]      41   0.003
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]     40   0.004
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]     40   0.004
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]     40   0.004
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]      40   0.004
gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]            40   0.004
gi|9558733 transformer-2 alpha [Homo sapiens]                          40   0.005
gi|158534059 formin binding protein 4 [Homo sapiens]                   40   0.005
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)...    40   0.007
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ...    39   0.009

>gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo
           sapiens]
          Length = 517

 Score = 1048 bits (2710), Expect = 0.0
 Identities = 517/517 (100%), Positives = 517/517 (100%)

Query: 1   MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSD 60
           MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSD
Sbjct: 1   MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSD 60

Query: 61  KGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKR 120
           KGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKR
Sbjct: 61  KGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKR 120

Query: 121 SDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVP 180
           SDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVP
Sbjct: 121 SDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVP 180

Query: 181 KFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELS 240
           KFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELS
Sbjct: 181 KFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELS 240

Query: 241 SEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSL 300
           SEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSL
Sbjct: 241 SEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSL 300

Query: 301 HPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNI 360
           HPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNI
Sbjct: 301 HPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNI 360

Query: 361 GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNC 420
           GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNC
Sbjct: 361 GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNC 420

Query: 421 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA 480
           RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA
Sbjct: 421 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA 480

Query: 481 KALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRKC 517
           KALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRKC
Sbjct: 481 KALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRKC 517


>gi|38454188 RNA binding motif protein 41 [Homo sapiens]
          Length = 413

 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 49/125 (39%), Positives = 78/125 (62%), Gaps = 5/125 (4%)

Query: 385 PSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYV 444
           P E +   E+++ R+S EE+  + +F SY PGEPN  +Y+KNL+  V E+DL  +F R+ 
Sbjct: 274 PIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARF- 332

Query: 445 DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 504
               E +      R+M  GRM+GQAFI  PN++ A +AL   NGY L+GK +V++F ++ 
Sbjct: 333 ---QEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 388

Query: 505 RPKQD 509
           + + +
Sbjct: 389 KQRSN 393



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 18  SSLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQS---VRVLSDKGRLKHTAFATFPN 74
           SS +P   ++ L +++L   +T  +   L   F  +    ++     GR++  AF TFPN
Sbjct: 300 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN 359

Query: 75  EKAAIKALTRLHQLKLLGHTLVVEFAKEQ 103
           ++ A +AL  ++  KL G  LV+EF K +
Sbjct: 360 KEIAWQALHLVNGYKLYGKILVIEFGKNK 388


>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
           sapiens]
          Length = 282

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 418 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 477
           PN  IY+ NL + +++ +LK     Y  FS   Q  + DI + +  +M+GQAF+      
Sbjct: 8   PNHTIYINNLNEKIKKDELKKSL--YAIFSQFGQ--ILDILVSRSLKMRGQAFVIFKEVS 63

Query: 478 AAAKALKEANGYVLFGKPMVVQFARS 503
           +A  AL+   G+  + KPM +Q+A++
Sbjct: 64  SATNALRSMQGFPFYDKPMRIQYAKT 89


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 18/163 (11%)

Query: 353 TEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRS 412
           T+    + GFG +    + +  E+ ++  DEM  + ++ +++  GR  ++      + R+
Sbjct: 224 TDESGKSKGFGFV----SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRT 279

Query: 413 YEPGEPN-------CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRM 465
           +E  + +         +YVKNL   + ++ L+  F  +   +S          +M+ GR 
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKV-------MMEGGRS 332

Query: 466 KGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQ 508
           KG  F+   + + A KA+ E NG ++  KP+ V  A+    +Q
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 400 SREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL 459
           SR+E E     R+ E   PN  +Y+KN  + + ++ LK +FG++    S   ++M D   
Sbjct: 175 SRKEREAELGARAKE--FPN--VYIKNFGEDMDDERLKDLFGKFGPALS--VKVMTD--- 225

Query: 460 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQ 508
            + G+ KG  F+     + A KA+ E NG  L GK + V  A+    +Q
Sbjct: 226 -ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273



 Score = 35.4 bits (80), Expect = 0.13
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 422 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAK 481
           I+VKNL K +  K L        D  S    I+    +  E   KG  F+     +AA +
Sbjct: 101 IFVKNLDKSINNKAL-------YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAER 153

Query: 482 ALKEANGYVLFGKPMVVQFARSARPKQ 508
           A+K+ NG +L G+ + V   +S + ++
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKERE 180


>gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Homo
           sapiens]
          Length = 225

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 418 PNCRIYVKNLAKHVQEKDLKY-IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 476
           PN  IY+ N+   +++++LK  ++  +  F       + DI  +K  +M+GQAF+     
Sbjct: 5   PNHTIYINNMNDKIKKEELKRSLYALFSQFGH-----VVDIVALKTMKMRGQAFVIFKEL 59

Query: 477 KAAAKALKEANGYVLFGKPMVVQFARS 503
            ++  AL++  G+  +GKPM +Q+A++
Sbjct: 60  GSSTNALRQLQGFPFYGKPMRIQYAKT 86


>gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo
           sapiens]
          Length = 225

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 418 PNCRIYVKNLAKHVQEKDLKY-IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 476
           PN  IY+ N+   +++++LK  ++  +  F       + DI  +K  +M+GQAF+     
Sbjct: 5   PNHTIYINNMNDKIKKEELKRSLYALFSQFGH-----VVDIVALKTMKMRGQAFVIFKEL 59

Query: 477 KAAAKALKEANGYVLFGKPMVVQFARS 503
            ++  AL++  G+  +GKPM +Q+A++
Sbjct: 60  GSSTNALRQLQGFPFYGKPMRIQYAKT 86


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 18/163 (11%)

Query: 353 TEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRS 412
           T+    + GFG +    + +  E+ ++  DEM  + ++ +++  GR  ++      + R 
Sbjct: 224 TDESGKSKGFGFV----SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279

Query: 413 YEPGEPN-------CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRM 465
           +E  + +         +YVKNL   + ++ L+  F  +   +S          +M+ GR 
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV-------MMEGGRS 332

Query: 466 KGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQ 508
           KG  F+   + + A KA+ E NG ++  KP+ V  A+    +Q
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)

Query: 374 TEEIKEDS-DEMPSECISRRELEKGRI-SREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
           T+E  E + ++M    ++ R++  GR  SR+E E     R+ E       +Y+KN  + +
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE----FTNVYIKNFGEDM 202

Query: 432 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 491
            ++ LK +FG++    S   ++M D    + G+ KG  F+     + A KA+ E NG  L
Sbjct: 203 DDERLKDLFGKFGPALS--VKVMTD----ESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256

Query: 492 FGKPMVVQFARSARPKQDPKEGKRK 516
            GK + V   R+ +  +   E KRK
Sbjct: 257 NGKQIYV--GRAQKKVERQTELKRK 279


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 417 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 476
           +PNC + V  L+ +  E+DL+ +F +Y   +  +  I++D    +  R +G AF+   N 
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS--IVYD---QQSRRSRGFAFVYFENV 169

Query: 477 KAAAKALKEANGYVLFGKPMVVQFARSARP 506
             A +A + ANG  L G+ + V F+ + RP
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFSITKRP 199


>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
           sapiens]
          Length = 614

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 16/159 (10%)

Query: 352 ATEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFR 411
           + +V   N G  + F   N +  EE ++    M  + +S R L  GR  +       + R
Sbjct: 219 SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKR 278

Query: 412 SYEPGEPN-------CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG- 463
            +E  + +         +YVKNL   + +  L+  F  Y         ++   ++M EG 
Sbjct: 279 RFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPY--------GVITSAKVMTEGG 330

Query: 464 RMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
             KG  F+   + + A KA+ E NG ++  KP+ V  A+
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369



 Score = 36.2 bits (82), Expect = 0.074
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 29  LLVRHLPAELTAEEKEDLLKYFGAQ-SVRVLSDK-GRLKHTAFATFPNEKAAIKALTRLH 86
           + V++LP ++  +  +DL   FG   SV+V+ D  G  +   F  F   + A KA+  ++
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252

Query: 87  QLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKK--------------KRSDDPVEDDKEKK 132
             ++ G  L    A+++    +       + K              K  DD ++DDK +K
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312

Query: 133 E 133
           E
Sbjct: 313 E 313



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 361 GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRI-SREEMETLSVFRSYEPGEPN 419
           GFG +    + +  E  ++  + M    ++ R++  G   SR E E     R+ E     
Sbjct: 139 GFGFV----HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE----F 190

Query: 420 CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE--GRMKGQAFIGLPNEK 477
             IYVKNL   V E+ L+ +F ++          M  +++M++  G  +   F+     +
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGK--------MLSVKVMRDNSGHSRCFGFVNFEKHE 242

Query: 478 AAAKALKEANGYVLFGKPMVVQFARSARPKQD 509
            A KA+   NG  + G+ +    A+    +Q+
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 18/149 (12%)

Query: 361 GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPN- 419
           GFG +  + + D  + +    +EM  + IS + +  GR  ++      + R +E  +   
Sbjct: 232 GFGFVSYEKHEDANKAV----EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287

Query: 420 ------CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGL 473
                   +Y+KNL   + ++ L+  F  +   +S          ++++GR KG  F+  
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-------MLEDGRSKGFGFVCF 340

Query: 474 PNEKAAAKALKEANGYVLFGKPMVVQFAR 502
            + + A KA+ E NG ++  KP+ V  A+
Sbjct: 341 SSPEEATKAVTEMNGRIVGSKPLYVALAQ 369



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 17/138 (12%)

Query: 382 DEMPSECISRRELEKGRI-SREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIF 440
           ++M    ++ R++  GR  SR+E E     ++ E       +Y+KN  + V ++ LK +F
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE----FTNVYIKNFGEEVDDESLKELF 211

Query: 441 GRYVDFSSETQRIMFDIRLMKE--GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 498
            ++    S        +++M++  G+ KG  F+     + A KA++E NG  + GK  ++
Sbjct: 212 SQFGKTLS--------VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK--II 261

Query: 499 QFARSARPKQDPKEGKRK 516
              R+ +  +   E KRK
Sbjct: 262 FVGRAQKKVERQAELKRK 279



 Score = 35.8 bits (81), Expect = 0.097
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 422 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAK 481
           +++KNL K +  K L   F  + +  S   +++ D     E   KG AF+    ++AA K
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILS--CKVVCD-----ENGSKGYAFVHFETQEAADK 153

Query: 482 ALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK 516
           A+++ NG +L  + + V   +S + ++     K K
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 188


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 18/149 (12%)

Query: 361 GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPN- 419
           GFG +  + + D  + +    +EM  + IS + +  GR  ++      + R +E  +   
Sbjct: 232 GFGFVSYEKHEDANKAV----EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287

Query: 420 ------CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGL 473
                   +Y+KNL   + ++ L+  F  +   +S          ++++GR KG  F+  
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-------MLEDGRSKGFGFVCF 340

Query: 474 PNEKAAAKALKEANGYVLFGKPMVVQFAR 502
            + + A KA+ E NG ++  KP+ V  A+
Sbjct: 341 SSPEEATKAVTEMNGRIVGSKPLYVALAQ 369



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 17/138 (12%)

Query: 382 DEMPSECISRRELEKGRI-SREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIF 440
           ++M    ++ R++  GR  SR+E E     ++ E       +Y+KN  + V ++ LK +F
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE----FTNVYIKNFGEEVDDESLKELF 211

Query: 441 GRYVDFSSETQRIMFDIRLMKE--GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 498
            ++    S        +++M++  G+ KG  F+     + A KA++E NG  + GK  ++
Sbjct: 212 SQFGKTLS--------VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK--II 261

Query: 499 QFARSARPKQDPKEGKRK 516
              R+ +  +   E KRK
Sbjct: 262 FVGRAQKKVERQAELKRK 279



 Score = 35.8 bits (81), Expect = 0.097
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 422 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAK 481
           +++KNL K +  K L   F  + +  S   +++ D     E   KG AF+    ++AA K
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILS--CKVVCD-----ENGSKGYAFVHFETQEAADK 153

Query: 482 ALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK 516
           A+++ NG +L  + + V   +S + ++     K K
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 188


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 18/149 (12%)

Query: 361 GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPN- 419
           GFG +  + + D  + +    +EM  + IS + +  GR  ++      + R +E  +   
Sbjct: 232 GFGFVSYEKHEDANKAV----EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287

Query: 420 ------CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGL 473
                   +Y+KNL   + ++ L+  F  +   +S          ++++GR KG  F+  
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-------MLEDGRSKGFGFVCF 340

Query: 474 PNEKAAAKALKEANGYVLFGKPMVVQFAR 502
            + + A KA+ E NG ++  KP+ V  A+
Sbjct: 341 SSPEEATKAVTEMNGRIVGSKPLYVALAQ 369



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 17/138 (12%)

Query: 382 DEMPSECISRRELEKGRI-SREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIF 440
           ++M    ++ R++  GR  SR+E E     ++ E       +Y+KN  + V ++ LK +F
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE----FTNVYIKNFGEEVDDESLKELF 211

Query: 441 GRYVDFSSETQRIMFDIRLMKE--GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 498
            ++    S        +++M++  G+ KG  F+     + A KA++E NG  + GK  ++
Sbjct: 212 SQFGKTLS--------VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK--II 261

Query: 499 QFARSARPKQDPKEGKRK 516
              R+ +  +   E KRK
Sbjct: 262 FVGRAQKKVERQAELKRK 279



 Score = 35.8 bits (81), Expect = 0.097
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 422 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAK 481
           +++KNL K +  K L   F  + +  S   +++ D     E   KG AF+    ++AA K
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILS--CKVVCD-----ENGSKGYAFVHFETQEAADK 153

Query: 482 ALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK 516
           A+++ NG +L  + + V   +S + ++     K K
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 188


>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
           sapiens]
          Length = 370

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 20/158 (12%)

Query: 353 TEVDASNIGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRS 412
           T+    + GFG +    + D  E  K+  +EM    I+ + +  GR  ++      + + 
Sbjct: 223 TDSSGKSKGFGFV----SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQM 278

Query: 413 YEP-------GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE-GR 464
           +E        G    ++Y+KNL   + ++ L+  F  +   S         +++M+E G+
Sbjct: 279 FEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR--------VKVMQEEGQ 330

Query: 465 MKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 502
            KG   I   + + A KA+ E NG +L  KP+ +  A+
Sbjct: 331 SKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 422 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAK 481
           +Y+KN    + ++ LK +F +Y    + + ++M D      G+ KG  F+   + +AA K
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKY--GKTLSVKVMTD----SSGKSKGFGFVSFDSHEAAKK 245

Query: 482 ALKEANGYVLFGKPMVVQFARSARPKQ 508
           A++E NG  + G+ + V  A+    +Q
Sbjct: 246 AVEEMNGRDINGQLIFVGRAQKKVERQ 272



 Score = 36.6 bits (83), Expect = 0.057
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 422 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAK 481
           +++KNL K +  K L   F  +    S   ++M D     +   KG AF+   N+ AA +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSS--KVMSD-----DQGSKGYAFVHFQNQSAADR 152

Query: 482 ALKEANGYVLFG 493
           A++E NG +L G
Sbjct: 153 AIEEMNGKLLKG 164


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 421 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA 480
           R+YV +L  ++ E  L+ IF  +     E+ ++M D    + GR KG  FI   + + A 
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRI--ESIQLMMD---SETGRSKGYGFITFSDSECAK 305

Query: 481 KALKEANGYVLFGKPMVV 498
           KAL++ NG+ L G+PM V
Sbjct: 306 KALEQLNGFELAGRPMKV 323


>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
          Length = 530

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 421 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA 480
           R+YV +L  ++ E  L+ IF  +     E+ ++M D    + GR KG  FI   + + A 
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRI--ESIQLMMD---SETGRSKGYGFITFSDSECAK 305

Query: 481 KALKEANGYVLFGKPMVV 498
           KAL++ NG+ L G+PM V
Sbjct: 306 KALEQLNGFELAGRPMKV 323


>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
          Length = 304

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 391 RRELEKGR-ISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEK-DLKYIFGRYVDFSS 448
           RR L++G  I   + +T +V    +P   N R+++ NL   + +K D++ IF +Y     
Sbjct: 4   RRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYG---- 59

Query: 449 ETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQ 508
                    +++     KG AF+   +E+ A  A+   N  V+ G+P+ +  A   +P +
Sbjct: 60  ---------KIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYR 110

Query: 509 DPKEGKRK 516
            PK G ++
Sbjct: 111 -PKPGNKR 117


>gi|109240550 paraspeckle protein 1 [Homo sapiens]
          Length = 523

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)

Query: 402 EEME-TLSVFRSYEPGEPN----CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 456
           EEM  T+ +    +PGE      CR++V NL   + E+D K +F RY     E   +  +
Sbjct: 59  EEMGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERY----GEPSEVFIN 114

Query: 457 IRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 501
                  R +G  FI L +   A  A  E +G +L  +P+ ++FA
Sbjct: 115 -------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 152


>gi|13027642 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
           a [Homo sapiens]
          Length = 246

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 416 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN 475
           G+P   ++V  L    +E  LK +F RY D      R +  +R +  G  KG AFI    
Sbjct: 47  GDPLLTLFVARLNLQTKEDKLKEVFSRYGDI-----RRLRLVRDLVTGFSKGYAFIEYKE 101

Query: 476 EKAAAKALKEANGYVL 491
           E+A  KA ++A+G V+
Sbjct: 102 ERAVIKAYRDADGLVI 117


>gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
           b [Homo sapiens]
          Length = 251

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 416 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN 475
           G+P   ++V  L    +E  LK +F RY D      R +  +R +  G  KG AFI    
Sbjct: 52  GDPLLTLFVARLNLQTKEDKLKEVFSRYGDI-----RRLRLVRDLVTGFSKGYAFIEYKE 106

Query: 476 EKAAAKALKEANGYVL 491
           E+A  KA ++A+G V+
Sbjct: 107 ERAVIKAYRDADGLVI 122


>gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
           b [Homo sapiens]
          Length = 251

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 416 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN 475
           G+P   ++V  L    +E  LK +F RY D      R +  +R +  G  KG AFI    
Sbjct: 52  GDPLLTLFVARLNLQTKEDKLKEVFSRYGDI-----RRLRLVRDLVTGFSKGYAFIEYKE 106

Query: 476 EKAAAKALKEANGYVL 491
           E+A  KA ++A+G V+
Sbjct: 107 ERAVIKAYRDADGLVI 122


>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
          Length = 382

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 390 SRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 449
           +++++E+    R   E L +     P  P   IY+KNL + + ++ LK  F  +   S  
Sbjct: 274 AQKKIERLAELRRRFERLRLKEKSRP--PGVPIYIKNLDETINDEKLKEEFSSFGSISRA 331

Query: 450 TQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 505
             ++M ++     G+ KG   +   + + A KA+ E NG ++  KP+ V   ++ R
Sbjct: 332 --KVMMEV-----GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380


>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 11/81 (13%)

Query: 421 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE---GRMKGQAFIGLPNEK 477
           R+YV +L  ++ E  L+ IF  +    +        I LMK+   GR KG  FI   + +
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSE 281

Query: 478 AAAKALKEANGYVLFGKPMVV 498
            A +AL++ NG+ L G+PM V
Sbjct: 282 CARRALEQLNGFELAGRPMRV 302


>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 11/81 (13%)

Query: 421 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE---GRMKGQAFIGLPNEK 477
           R+YV +L  ++ E  L+ IF  +    +        I LMK+   GR KG  FI   + +
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSE 315

Query: 478 AAAKALKEANGYVLFGKPMVV 498
            A +AL++ NG+ L G+PM V
Sbjct: 316 CARRALEQLNGFELAGRPMRV 336


>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
          Length = 423

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 11/81 (13%)

Query: 421 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE---GRMKGQAFIGLPNEK 477
           R+YV +L  ++ E  L+ IF  +    +        I LMK+   GR KG  FI   + +
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSE 299

Query: 478 AAAKALKEANGYVLFGKPMVV 498
            A +AL++ NG+ L G+PM V
Sbjct: 300 CARRALEQLNGFELAGRPMRV 320


>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
          Length = 344

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 13/89 (14%)

Query: 421 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA 480
           R+Y+  L+ +V+EKD++  F  Y              RL++     G  F+   + + A 
Sbjct: 3   RVYIGRLSYNVREKDIQRFFSGYG-------------RLLEVDLKNGYGFVEFEDSRDAD 49

Query: 481 KALKEANGYVLFGKPMVVQFARSARPKQD 509
            A+ E NG  L G+ ++V+ AR  R  +D
Sbjct: 50  DAVYELNGKELCGERVIVEHARGPRRDRD 78


>gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]
          Length = 678

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 27  RTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLH 86
           R +LV++LP +   +E  DLLK +  +   V     R K TAF T  N + A  A+   H
Sbjct: 69  RKILVKNLPQDSNCQEVHDLLKDYDLKYCYV----DRNKRTAFVTLLNGEQAQNAIQMFH 124

Query: 87  QLKLLGHTLVVE 98
           Q    G  L+V+
Sbjct: 125 QYSFRGKDLIVQ 136


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 417 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 476
           +PN  + V  L+ +  E+DL+ +F RY   S     +++D R    GR +G AF+     
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVN--VVYDQRT---GRSRGFAFVYFERI 170

Query: 477 KAAAKALKEANGYVLFGKPMVVQFARSAR 505
             + +A++ ANG  L G+ + V ++ + R
Sbjct: 171 DDSKEAMERANGMELDGRRIRVDYSITKR 199


>gi|158534059 formin binding protein 4 [Homo sapiens]
          Length = 1017

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 205 RPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELSSEESEYESTDD 251
           +PP+  + MP   P PP SP PP  PP P ED E+   E E E +++
Sbjct: 704 QPPLPLE-MPPPPPPPPESPPPPPPPPPPAEDGEIQEVEMEDEGSEE 749


>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
            [Homo sapiens]
          Length = 2073

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 44/212 (20%), Positives = 83/212 (39%), Gaps = 29/212 (13%)

Query: 204  ARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELSSEESEYESTDDEDRQ-------- 255
            +RP   E    L      +  +  EE    +E+EE   E+ E E  ++E+ +        
Sbjct: 1051 SRPVTGERGQLLELSKESSEEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSP 1110

Query: 256  -RMNKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQ 314
             R+ K   +A ++ KRP  +K++  RK+R+I   + T      + +      +   ++P 
Sbjct: 1111 PRLTKPQSVA-IKRKRPFVLKKKRGRKRRRINSSVTTETISETTEVLNEPFDNSDEERPM 1169

Query: 315  PVGNKRIEFHISTD-----MPAAFKKDLEKEQNCEEK----NHDLPATEVDASNIGFGKI 365
            P      E  +  D     +  AF+    K++  EE+    NH     +   +N+     
Sbjct: 1170 PQLEPTCEIEVEEDGRKPVLRKAFQHQPGKKRQTEEEEGKDNHCFKNADPCRNNMN---- 1225

Query: 366  FPKPNLDITEEIKEDSDEMPSECISRRELEKG 397
                  D +  +KE S + P     ++   KG
Sbjct: 1226 ------DDSSNLKEGSKDNPEPLKCKQVWPKG 1251


>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
           [Homo sapiens]
          Length = 730

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 409 VFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQ 468
           +  + + G     ++V NL   V  K LK +F      S     +  DI   K+G+ +G 
Sbjct: 193 IIHALQAGRLGSTVFVANLDYKVGWKKLKEVF------SMAGVVVRADILEDKDGKSRGI 246

Query: 469 AFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQD 509
             +       A +A+   NG +LF +PM V+    A PK D
Sbjct: 247 GTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGD 287


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,036,625
Number of Sequences: 37866
Number of extensions: 1240758
Number of successful extensions: 10259
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 340
Number of HSP's that attempted gapping in prelim test: 8285
Number of HSP's gapped (non-prelim): 1779
length of query: 517
length of database: 18,247,518
effective HSP length: 107
effective length of query: 410
effective length of database: 14,195,856
effective search space: 5820300960
effective search space used: 5820300960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.