Guide to the Human Genome
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Name: RBM41 Sequence: fasta or formatted (413aa) NCBI GI: 38454188
Description:

RNA binding motif protein 41

Referenced in:

RNA-binding Proteins
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         21           2
 C cysteine            1.2          5           1
 D aspartate           2.9         12           1
 E glutamate          10.4         43           3
 F phenylalanine       4.4         18           1
 G glycine             5.8         24           1
 H histidine           1.9          8           1
 I isoleucine          5.1         21           1
 K lysine              9.0         37           2
 L leucine             9.7         40           2
 M methionine          3.1         13           2
 N asparagine          3.6         15           2
 P proline             4.8         20           2
 Q glutamine           6.8         28           1
 R arginine            5.8         24           2
 S serine              8.7         36           2
 T threonine           5.3         22           2
 V valine              3.6         15           1
 W tryptophan          0.7          3           1
 Y tyrosine            1.9          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 41 
RNPC3                 0.089   RNA-binding region (RNP1, RRM) containing 3 
TRA2A                 0.034   transformer-2 alpha 
SNRPB2                0.028   small nuclear ribonucleoprotein polypeptide B'' [Hom...
SNRPB2                0.028   small nuclear ribonucleoprotein polypeptide B'' [Homo...
TRA2B                 0.025   splicing factor, arginine/serine-rich 10 
ELAVL1                0.025   ELAV-like 1 
RBM39                 0.025   RNA binding motif protein 39 isoform b 
RBM39                 0.025   RNA binding motif protein 39 isoform a 
IGF2BP2               0.025   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP2               0.025   insulin-like growth factor 2 mRNA binding protein 2 ...
RBM7                  0.025   RNA binding motif protein 7 
RBM18                 0.024   RNA binding motif protein 18 
RBM23                 0.024   RNA binding motif protein 23 isoform 3 
RBM23                 0.024   RNA binding motif protein 23 isoform 1 
RBM23                 0.024   RNA binding motif protein 23 isoform 2 
ELAVL4                0.024   ELAV-like 4 isoform 1 
ELAVL4                0.024   ELAV-like 4 isoform 5 
ELAVL4                0.024   ELAV-like 4 isoform 4 
ELAVL4                0.024   ELAV-like 4 isoform 3 
ELAVL4                0.024   ELAV-like 4 isoform 2 
ELAVL2                0.023   ELAV (embryonic lethal, abnormal vision, Drosophila...
ELAVL3                0.023   ELAV-like protein 3 isoform 1 
ELAVL3                0.023   ELAV-like protein 3 isoform 2 
SNRPA                 0.021   small nuclear ribonucleoprotein polypeptide A 
RBM28                 0.021   RNA binding motif protein 28 
CSTF2                 0.020   cleavage stimulation factor subunit 2 
PABPC4                0.020   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.020   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.020   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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