Guide to the Human Genome
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Name: SFRS6 Sequence: fasta or formatted (344aa) NCBI GI: 20127499
Description:

arginine/serine-rich splicing factor 6

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          9           1
 C cysteine            0.6          2           1
 D aspartate           5.8         20           2
 E glutamate           5.5         19           1
 F phenylalanine       1.7          6           2
 G glycine             7.6         26           4
 H histidine           1.5          5           1
 I isoleucine          2.9         10           1
 K lysine              7.6         26           1
 L leucine             3.8         13           2
 M methionine          0.9          3           1
 N asparagine          2.6          9           1
 P proline             4.1         14           3
 Q glutamine           1.2          4           1
 R arginine           20.1         69           3
 S serine             21.5         74           3
 T threonine           2.0          7           1
 V valine              3.8         13           1
 W tryptophan          0.3          1           1
 Y tyrosine            4.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arginine/serine-rich splicing factor 6 
SFRS4                 0.612   splicing factor, arginine/serine-rich 4 
SFRS5                 0.433   splicing factor, arginine/serine-rich 5 
SFRS5                 0.433   splicing factor, arginine/serine-rich 5 
SFRS1                 0.222   splicing factor, arginine/serine-rich 1 isoform 1 [Ho...
SFRS1                 0.163   splicing factor, arginine/serine-rich 1 isoform 2 [...
SFRS9                 0.161   splicing factor, arginine/serine-rich 9 
FUSIP1                0.121   FUS interacting protein (serine-arginine rich) 1 iso...
SFRS7                 0.120   splicing factor, arginine/serine-rich 7 
SFRS2                 0.118   splicing factor, arginine/serine-rich 2 
RSRC2                 0.115   arginine/serine-rich coiled-coil 2 isoform b 
RSRC2                 0.115   arginine/serine-rich coiled-coil 2 isoform a 
SRRM2                 0.113   splicing coactivator subunit SRm300 
LOC100170229          0.112   hypothetical protein LOC100170229 
SFRS2B                0.106   splicing factor, arginine/serine-rich 2B 
PRPF38B               0.103   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
SFRS16                0.101   splicing factor, arginine/serine-rich 16 
ZRANB2                0.100   zinc finger protein 265 isoform 1 
SON                   0.098   SON DNA-binding protein isoform F 
SON                   0.098   SON DNA-binding protein isoform B 
SFRS11                0.097   splicing factor, arginine/serine-rich 11 
ZRANB2                0.097   zinc finger protein 265 isoform 2 
SRrp35                0.095   serine-arginine repressor protein 
CHERP                 0.094   calcium homeostasis endoplasmic reticulum protein [...
SFRS12                0.092   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.092   splicing factor, arginine/serine-rich 12 isoform b [...
DDX46                 0.090   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
CROP                  0.089   cisplatin resistance-associated overexpressed protei...
CROP                  0.089   cisplatin resistance-associated overexpressed protei...
NKTR                  0.087   natural killer-tumor recognition sequence 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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