Guide to the Human Genome
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Name: SNRNP35 Sequence: fasta or formatted (251aa) NCBI GI: 31077198
Description:

small nuclear ribonucleoprotein 35kDa (U11/U12) isoform b

Referenced in:

Capping and Splicing

Other entries for this name:
alt prot [246aa] small nuclear ribonucleoprotein 35kDa (U11/U12) isoform a
alt mRNA [251aa] small nuclear ribonucleoprotein 35kDa (U11/U12) isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         11           1
 C cysteine            0.0          0           0
 D aspartate          10.0         25           2
 E glutamate           8.8         22           2
 F phenylalanine       3.2          8           1
 G glycine             8.4         21           3
 H histidine           1.6          4           1
 I isoleucine          4.4         11           1
 K lysine              8.4         21           2
 L leucine             7.6         19           2
 M methionine          1.6          4           1
 N asparagine          2.8          7           1
 P proline             4.8         12           1
 Q glutamine           1.6          4           1
 R arginine           15.9         40           2
 S serine              2.8          7           1
 T threonine           2.8          7           1
 V valine              5.2         13           2
 W tryptophan          2.8          7           1
 Y tyrosine            3.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small nuclear ribonucleoprotein 35kDa (U11/U12) isof... 
SNRNP35               1.000   small nuclear ribonucleoprotein 35kDa (U11/U12) isof...
SNRNP35               0.978   small nuclear ribonucleoprotein 35kDa (U11/U12) isof...
SNRNP70               0.253   U1 small nuclear ribonucleoprotein 70 kDa 
PPIL4                 0.100   peptidylprolyl isomerase-like 4 
SFRS2                 0.082   splicing factor, arginine/serine-rich 2 
TRA2A                 0.074   transformer-2 alpha 
RBMXL3                0.070   RNA binding motif protein, X-linked-like 3 
SFRS2B                0.068   splicing factor, arginine/serine-rich 2B 
CSTF2T                0.058   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
RBM19                 0.058   RNA binding motif protein 19 
RBM19                 0.058   RNA binding motif protein 19 
RBM19                 0.058   RNA binding motif protein 19 
CSTF2                 0.058   cleavage stimulation factor subunit 2 
NCL                   0.058   nucleolin 
U2AF2                 0.056   U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo...
U2AF2                 0.056   U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor...
RBMX2                 0.056   RNA binding motif protein, X-linked 2 
ELAVL3                0.054   ELAV-like protein 3 isoform 1 
ELAVL3                0.054   ELAV-like protein 3 isoform 2 
RBMXL1                0.054   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.054   RNA binding motif protein, X-linked-like 1 
LOC100288788          0.052   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.052   PREDICTED: hypothetical protein XP_002343863 
TRA2B                 0.052   splicing factor, arginine/serine-rich 10 
RBMX                  0.052   RNA binding motif protein, X-linked 
ZC3H18                0.052   zinc finger CCCH-type containing 18 
RBM39                 0.050   RNA binding motif protein 39 isoform b 
RBM39                 0.050   RNA binding motif protein 39 isoform a 
RBM3                  0.050   RNA binding motif protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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