Guide to the Human Genome
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Name: PSPC1 Sequence: fasta or formatted (523aa) NCBI GI: 109240550
Description:

paraspeckle protein 1

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         45           5
 C cysteine            0.4          2           1
 D aspartate           3.8         20           2
 E glutamate          11.5         60           3
 F phenylalanine       4.4         23           1
 G glycine             9.4         49           2
 H histidine           1.7          9           1
 I isoleucine          2.9         15           1
 K lysine              4.6         24           1
 L leucine             6.7         35           2
 M methionine          5.5         29           2
 N asparagine          3.8         20           2
 P proline             9.2         48           3
 Q glutamine           5.5         29           2
 R arginine            9.9         52           3
 S serine              3.4         18           1
 T threonine           3.6         19           3
 V valine              3.6         19           4
 W tryptophan          0.2          1           1
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   paraspeckle protein 1 
NONO                  0.498   non-POU domain containing, octamer-binding isoform ...
NONO                  0.498   non-POU domain containing, octamer-binding isoform ...
NONO                  0.498   non-POU domain containing, octamer-binding isoform 1...
SFPQ                  0.493   splicing factor proline/glutamine rich (polypyrimidin...
NONO                  0.432   non-POU domain containing, octamer-binding isoform ...
TCHH                  0.046   trichohyalin 
RAVER1                0.042   RAVER1 
LOC100133758          0.041   PREDICTED: hypothetical protein, partial 
ELAVL4                0.039   ELAV-like 4 isoform 1 
LOC645202             0.039   PREDICTED: hypothetical protein LOC645202 
ELAVL4                0.039   ELAV-like 4 isoform 5 
ELAVL4                0.039   ELAV-like 4 isoform 4 
ELAVL4                0.039   ELAV-like 4 isoform 3 
ELAVL4                0.039   ELAV-like 4 isoform 2 
ENAH                  0.039   enabled homolog isoform a 
ENAH                  0.039   enabled homolog isoform b 
MAP4K4                0.038   mitogen-activated protein kinase kinase kinase kinas...
PABPC5                0.038   poly(A) binding protein, cytoplasmic 5 
LOC283685             0.038   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RBM4B                 0.038   RNA binding motif protein 4B 
LOC283767             0.038   golgi autoantigen, golgin subfamily a-like 
RBM4                  0.038   RNA binding motif protein 4 
LOC283685             0.037   PREDICTED: golgi autoantigen, golgin subfamily a-li...
SAFB2                 0.037   scaffold attachment factor B2 
MAP4K4                0.036   mitogen-activated protein kinase kinase kinase kinas...
ELAVL3                0.036   ELAV-like protein 3 isoform 1 
ELAVL3                0.036   ELAV-like protein 3 isoform 2 
ELAVL2                0.036   ELAV (embryonic lethal, abnormal vision, Drosophila...
PABPC4                0.036   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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