Search of human proteins with 40255182

Search of human proteins with 40255182

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40255182 potassium channel tetramerisation domain containing
20 [Homo sapiens]
         (419 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40255182 potassium channel tetramerisation domain containing ...   865   0.0  
gi|31044440 K+ channel tetramerization protein [Homo sapiens]         486   e-137
gi|27436981 potassium voltage-gated channel, Shal-related subfam...    40   0.005
gi|189571693 potassium channel tetramerisation domain containing...    35   0.13 
gi|189571691 potassium channel tetramerisation domain containing...    35   0.13 
gi|9789987 potassium voltage-gated channel, Shal-related subfami...    34   0.28 
gi|27436984 potassium voltage-gated channel, Shal-related subfam...    34   0.28 
gi|27436986 potassium voltage-gated channel, Shal-related subfam...    34   0.28 
gi|11545731 gigaxonin [Homo sapiens]                                   34   0.28 
gi|19923973 potassium channel tetramerisation domain containing ...    33   0.63 
gi|4826786 Shaw-related voltage-gated potassium channel protein ...    33   0.63 
gi|163792201 Shaw-related voltage-gated potassium channel protei...    33   0.63 
gi|71143104 potassium channel tetramerisation domain containing ...    33   0.63 
gi|4504821 potassium voltage-gated channel, shaker-related subfa...    32   0.82 
gi|23308551 potassium channel tetramerisation domain containing ...    32   1.1  
gi|88758576 Shaw-related voltage-gated potassium channel protein...    32   1.4  
gi|24497462 Shaw-related voltage-gated potassium channel protein...    32   1.4  
gi|24497464 Shaw-related voltage-gated potassium channel protein...    32   1.4  
gi|4504817 potassium voltage-gated channel, shaker-related subfa...    31   2.4  
gi|7657289 potassium channel, subfamily V, member 1 [Homo sapiens]     30   3.1  
gi|24497460 Shaw-related voltage-gated potassium channel protein...    30   4.1  
gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1 p...    30   5.3  
gi|188536103 cryptochrome 2 (photolyase-like) isoform 2 [Homo sa...    29   9.1  
gi|188536100 cryptochrome 2 (photolyase-like) isoform 1 [Homo sa...    29   9.1  
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    29   9.1  
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    29   9.1  
gi|21217561 Shaw-related voltage-gated potassium channel protein...    29   9.1  
gi|21217563 Shaw-related voltage-gated potassium channel protein...    29   9.1  
gi|24497458 Shaw-related voltage-gated potassium channel protein...    29   9.1  

>gi|40255182 potassium channel tetramerisation domain containing 20
           [Homo sapiens]
          Length = 419

 Score =  865 bits (2234), Expect = 0.0
 Identities = 419/419 (100%), Positives = 419/419 (100%)

Query: 1   MNVHRGSDSDRLLRQEASCLVDDTLAVAQEKEANSLASSGPHNLTYPLGPRNEDLSLDYA 60
           MNVHRGSDSDRLLRQEASCLVDDTLAVAQEKEANSLASSGPHNLTYPLGPRNEDLSLDYA
Sbjct: 1   MNVHRGSDSDRLLRQEASCLVDDTLAVAQEKEANSLASSGPHNLTYPLGPRNEDLSLDYA 60

Query: 61  SQPANLQFPHIMPLAEDIKGSCFQSGNKRNHEPFIAPERFGNSSVGFGSNSHSQAPEKVT 120
           SQPANLQFPHIMPLAEDIKGSCFQSGNKRNHEPFIAPERFGNSSVGFGSNSHSQAPEKVT
Sbjct: 61  SQPANLQFPHIMPLAEDIKGSCFQSGNKRNHEPFIAPERFGNSSVGFGSNSHSQAPEKVT 120

Query: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 180
           LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD
Sbjct: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 180

Query: 181 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 240
           YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE
Sbjct: 181 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 240

Query: 241 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 300
           ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE
Sbjct: 241 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 300

Query: 301 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 360
           NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG
Sbjct: 301 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 360

Query: 361 KSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVDELDRLNAPLSQMASNDFQD 419
           KSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVDELDRLNAPLSQMASNDFQD
Sbjct: 361 KSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVDELDRLNAPLSQMASNDFQD 419


>gi|31044440 K+ channel tetramerization protein [Homo sapiens]
          Length = 475

 Score =  486 bits (1252), Expect = e-137
 Identities = 225/289 (77%), Positives = 263/289 (91%)

Query: 117 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 176
           E+VTL+VD TRFVV+P IFTA P+TMLGRMFG GRE+NFTRPNEKGEYE+AEGI +TVFR
Sbjct: 167 ERVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKGEYEVAEGIGSTVFR 226

Query: 177 TVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFD 236
            +LDYYKTGII CPDGISIP+LR+ CDYLCI+F+++TI+C+DLSAL+HELSNDGA +QF+
Sbjct: 227 AILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELSNDGARRQFE 286

Query: 237 HYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFF 296
            YLEE+ILP+MV  A+ GERECHIVVLTD+D VDWDE++PP MGEEYSQI+YS+KLYRFF
Sbjct: 287 FYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQIIYSTKLYRFF 346

Query: 297 KYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWE 356
           KYIENRDVAK+VLKERGLK IR+GIEGYPT KEK+K+RPGGR EVIYNYVQRPFI+MSWE
Sbjct: 347 KYIENRDVAKSVLKERGLKKIRLGIEGYPTYKEKVKKRPGGRPEVIYNYVQRPFIRMSWE 406

Query: 357 KEEGKSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVDELDRL 405
           KEEGKSRHVDFQCV+SKS+TNL AA  D+ +DQ ++MH  PQVDELD L
Sbjct: 407 KEEGKSRHVDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDIL 455


>gi|27436981 potassium voltage-gated channel, Shal-related
           subfamily, member 1 [Homo sapiens]
          Length = 647

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 113 SQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISA 172
           S+  E + + V G RF         +PDT+LG       E  F    + GEY        
Sbjct: 36  SRGDEVLVVNVSGRRFETWKNTLDRYPDTLLG-----SSEKEFFYDADSGEYFFDR--DP 88

Query: 173 TVFRTVLDYYKTGIINCP 190
            +FR VL++Y+TG ++CP
Sbjct: 89  DMFRHVLNFYRTGRLHCP 106


>gi|189571693 potassium channel tetramerisation domain containing 6
           [Homo sapiens]
          Length = 237

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 117 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 176
           + VTL V G  +  +    T +PD+MLG MFG       T  + +G Y I       +FR
Sbjct: 12  DPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFP---TARDPQGNYFIDR--DGPLFR 66

Query: 177 TVLDYYKTGIINCP 190
            VL++ +T  +  P
Sbjct: 67  YVLNFLRTSELTLP 80


>gi|189571691 potassium channel tetramerisation domain containing 6
           [Homo sapiens]
          Length = 237

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 117 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 176
           + VTL V G  +  +    T +PD+MLG MFG       T  + +G Y I       +FR
Sbjct: 12  DPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFP---TARDPQGNYFIDR--DGPLFR 66

Query: 177 TVLDYYKTGIINCP 190
            VL++ +T  +  P
Sbjct: 67  YVLNFLRTSELTLP 80


>gi|9789987 potassium voltage-gated channel, Shal-related subfamily,
           member 2 [Homo sapiens]
          Length = 630

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 119 VTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTV 178
           + L V GTRF         +PDT+LG       E +F    E  +Y         +FR +
Sbjct: 43  IVLNVSGTRFQTWQDTLERYPDTLLG-----SSERDFFYHPETQQYFFDR--DPDIFRHI 95

Query: 179 LDYYKTGIINCP 190
           L++Y+TG ++ P
Sbjct: 96  LNFYRTGKLHYP 107


>gi|27436984 potassium voltage-gated channel, Shal-related
           subfamily, member 3 isoform 1 [Homo sapiens]
          Length = 655

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 109 SNSHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAE 168
           ++ + +  E + L V G RF         +PDT+LG       E  F    +  EY    
Sbjct: 32  ADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLG-----STEKEFFFNEDTKEYFFDR 86

Query: 169 GISATVFRTVLDYYKTGIINCP 190
                VFR VL++Y+TG ++ P
Sbjct: 87  --DPEVFRCVLNFYRTGKLHYP 106


>gi|27436986 potassium voltage-gated channel, Shal-related
           subfamily, member 3 isoform 2 [Homo sapiens]
          Length = 636

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 109 SNSHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAE 168
           ++ + +  E + L V G RF         +PDT+LG       E  F    +  EY    
Sbjct: 32  ADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLG-----STEKEFFFNEDTKEYFFDR 86

Query: 169 GISATVFRTVLDYYKTGIINCP 190
                VFR VL++Y+TG ++ P
Sbjct: 87  --DPEVFRCVLNFYRTGKLHYP 106


>gi|11545731 gigaxonin [Homo sapiens]
          Length = 597

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGE-YEIA-EGISATVFRTV 178
           L++DG    V   I  A    +  ++       N+  P + G  Y+I  EGIS  V R +
Sbjct: 34  LVLDGEEIPVQKNILAAASPYIRTKL-------NYNPPKDDGSTYKIELEGISVMVMREI 86

Query: 179 LDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALL 223
           LDY  +G I   +  +I D+    D L +  D  T+ C+ L   +
Sbjct: 87  LDYIFSGQIRLNED-TIQDVVQAADLLLLT-DLKTLCCEFLEGCI 129


>gi|19923973 potassium channel tetramerisation domain containing 12
           [Homo sapiens]
          Length = 325

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 101 GNSSVGFGSNSHSQAP----EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFT 156
           G    G GS+S S  P    + V L V G  +V       + PD++L RMF   +     
Sbjct: 14  GGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLLWRMFTQQQPQELA 73

Query: 157 RPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPD 191
           R + KG + +       +FR +LDY +   +  PD
Sbjct: 74  R-DSKGRFFLDR--DGFLFRYILDYLRDLQLVLPD 105


>gi|4826786 Shaw-related voltage-gated potassium channel protein 1
           isoform B [Homo sapiens]
          Length = 511

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 117 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 176
           E++ + V GTR           P T L  +  P    +F       E+         VF 
Sbjct: 8   ERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDR--HPGVFA 65

Query: 177 TVLDYYKTGIINCPDGISIP 196
            +L+YY+TG ++CP  +  P
Sbjct: 66  HILNYYRTGKLHCPADVCGP 85


>gi|163792201 Shaw-related voltage-gated potassium channel protein 1
           isoform A [Homo sapiens]
          Length = 585

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 117 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 176
           E++ + V GTR           P T L  +  P    +F       E+         VF 
Sbjct: 8   ERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDR--HPGVFA 65

Query: 177 TVLDYYKTGIINCPDGISIP 196
            +L+YY+TG ++CP  +  P
Sbjct: 66  HILNYYRTGKLHCPADVCGP 85


>gi|71143104 potassium channel tetramerisation domain containing 21
           [Homo sapiens]
          Length = 260

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 117 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 176
           + +TL V G  +  +    T+ PD+MLG MF        T+ + +G   I       VFR
Sbjct: 3   DPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMP---TKRDSQGNCFIDR--DGKVFR 57

Query: 177 TVLDYYKTGIINCPD 191
            +L++ +T  ++ P+
Sbjct: 58  YILNFLRTSHLDLPE 72


>gi|4504821 potassium voltage-gated channel, shaker-related
           subfamily, member 6 [Homo sapiens]
          Length = 529

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 117 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 176
           E++ + + G RF    +  +  PDT+LG    PGR   F  P  + EY      +   F 
Sbjct: 41  ERLVINISGLRFETQLRTLSLFPDTLLG---DPGRRVRFFDP-LRNEYFFDR--NRPSFD 94

Query: 177 TVLDYYKTG-----IINCPDGISIPDLR 199
            +L YY++G      +N P  I + ++R
Sbjct: 95  AILYYYQSGGRLRRPVNVPLDIFLEEIR 122


>gi|23308551 potassium channel tetramerisation domain containing 7
           [Homo sapiens]
          Length = 289

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 116 PEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVF 175
           PE V L + G  F         + DTML  MF  GR Y  T  + +G Y I      T F
Sbjct: 50  PEVVPLNIGGAHFTTRLSTLRCYEDTMLAAMFS-GRHYIPT--DSEGRYFIDR--DGTHF 104

Query: 176 RTVLDYYKTG 185
             VL++ ++G
Sbjct: 105 GDVLNFLRSG 114


>gi|88758576 Shaw-related voltage-gated potassium channel protein 4
           isoform c [Homo sapiens]
          Length = 626

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 15/95 (15%)

Query: 114 QAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISAT 173
           +A EK+ + V GTR           P T L  +  P       RP   G    + G S  
Sbjct: 33  EASEKIIINVGGTRHETYRSTLRTLPGTRLAWLADPD---GGGRPETDGGGVGSSGSSGG 89

Query: 174 ------------VFRTVLDYYKTGIINCPDGISIP 196
                       VF  VL+YY+TG ++CP  +  P
Sbjct: 90  GGCEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGP 124


>gi|24497462 Shaw-related voltage-gated potassium channel protein 4
           isoform a [Homo sapiens]
          Length = 635

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 15/95 (15%)

Query: 114 QAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISAT 173
           +A EK+ + V GTR           P T L  +  P       RP   G    + G S  
Sbjct: 33  EASEKIIINVGGTRHETYRSTLRTLPGTRLAWLADPD---GGGRPETDGGGVGSSGSSGG 89

Query: 174 ------------VFRTVLDYYKTGIINCPDGISIP 196
                       VF  VL+YY+TG ++CP  +  P
Sbjct: 90  GGCEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGP 124


>gi|24497464 Shaw-related voltage-gated potassium channel protein 4
           isoform b [Homo sapiens]
          Length = 582

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 15/95 (15%)

Query: 114 QAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISAT 173
           +A EK+ + V GTR           P T L  +  P       RP   G    + G S  
Sbjct: 33  EASEKIIINVGGTRHETYRSTLRTLPGTRLAWLADPD---GGGRPETDGGGVGSSGSSGG 89

Query: 174 ------------VFRTVLDYYKTGIINCPDGISIP 196
                       VF  VL+YY+TG ++CP  +  P
Sbjct: 90  GGCEFFFDRHPGVFAYVLNYYRTGKLHCPADVCGP 124


>gi|4504817 potassium voltage-gated channel, shaker-related
           subfamily, member 4 [Homo sapiens]
          Length = 653

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%)

Query: 106 GFGSNSHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLG------RMFGPGR-EYNFTRP 158
           G+ S  +S   E+V + V G RF    +     P+T+LG      + F P R EY F R 
Sbjct: 165 GYSSVRYSDCCERVVINVSGLRFETQMKTLAQFPETLLGDPEKRTQYFDPLRNEYFFDR- 223

Query: 159 NEKGEYEIAEGISATVFRTVLDYYKTG 185
                       +   F  +L YY++G
Sbjct: 224 ------------NRPSFDAILYYYQSG 238


>gi|7657289 potassium channel, subfamily V, member 1 [Homo sapiens]
          Length = 500

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 13/79 (16%)

Query: 120 TLLVDGTRFVVNPQIFTAHPDTMLGRMF-------GPGREYNFTRPNE------KGEYEI 166
           T+ V G+RFV++ Q  +  P T LG++         PG       P E        + E 
Sbjct: 42  TVNVGGSRFVLSQQALSCFPHTRLGKLAVVVASYRRPGALAAVPSPLELCDDANPVDNEY 101

Query: 167 AEGISATVFRTVLDYYKTG 185
               S+  FR VL YY+TG
Sbjct: 102 FFDRSSQAFRYVLHYYRTG 120


>gi|24497460 Shaw-related voltage-gated potassium channel protein 3
           [Homo sapiens]
          Length = 757

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 118 KVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRT 177
           K+ + V G R           P T L  +  P     F    + G  E        VF  
Sbjct: 89  KIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDY--DPGADEFFFDRHPGVFAY 146

Query: 178 VLDYYKTGIINCPDGISIP 196
           VL+YY+TG ++CP  +  P
Sbjct: 147 VLNYYRTGKLHCPADVCGP 165


>gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1
            precursor [Homo sapiens]
          Length = 2315

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 30/115 (26%)

Query: 235  FDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYR 294
            ++H +E +++  +    +KG R+C             D+  P    EEY   L + K  +
Sbjct: 1816 WEHNVEVIVM--ITNLVEKGRRKC-------------DQYWPADGSEEYGNFLVTQKSVQ 1860

Query: 295  FFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRP 349
               Y   R+          L+N +I        K   K RP GR    Y+Y Q P
Sbjct: 1861 VLAYYTVRNFT--------LRNTKIK-------KGSQKGRPSGRVVTQYHYTQWP 1900


>gi|188536103 cryptochrome 2 (photolyase-like) isoform 2 [Homo
           sapiens]
          Length = 532

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 12  LLRQEASCLVDDTLAVAQ--EKEANSLASSGPHNLTYPLGPRNEDLSLDYASQP 63
           LL    SC+ D +  VA+    +A S++S+GP  L  P GP +    L+ A +P
Sbjct: 457 LLASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPL--PSGPASPKRKLEAAEEP 508


>gi|188536100 cryptochrome 2 (photolyase-like) isoform 1 [Homo
           sapiens]
          Length = 614

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 12  LLRQEASCLVDDTLAVAQ--EKEANSLASSGPHNLTYPLGPRNEDLSLDYASQP 63
           LL    SC+ D +  VA+    +A S++S+GP  L  P GP +    L+ A +P
Sbjct: 539 LLASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPL--PSGPASPKRKLEAAEEP 590


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 10   DRLLRQEASCLVDDTLAVAQEKEANSLASSGPHNLTYPLGPRNEDLSLDYASQPANL--- 66
            D    +    +++D +   Q     + A +   ++   L PR   L+L+YA+ P  +   
Sbjct: 1666 DTAALENRQTIINDYITSQQMHHNAATAMAQRADMLRGLSPRESSLALNYAAGPRGIIDL 1725

Query: 67   -QFPHIMPLAEDIKGSCFQSGNKRNHEPFIAPERFGNSSVGFGSNSHSQAP 116
             Q PH+  L     G+   + ++  + P  AP+ F        S+ HS +P
Sbjct: 1726 SQVPHLPVLVPPTPGTPATAMDRLAYLP-TAPQPF--------SSRHSSSP 1767


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
          Length = 2524

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 10   DRLLRQEASCLVDDTLAVAQEKEANSLASSGPHNLTYPLGPRNEDLSLDYASQPANL--- 66
            D    +    +++D +   Q     + A +   ++   L PR   L+L+YA+ P  +   
Sbjct: 1682 DTAALENRQTIINDYITSQQMHHNAATAMAQRADMLRGLSPRESSLALNYAAGPRGIIDL 1741

Query: 67   -QFPHIMPLAEDIKGSCFQSGNKRNHEPFIAPERFGNSSVGFGSNSHSQAP 116
             Q PH+  L     G+   + ++  + P  AP+ F        S+ HS +P
Sbjct: 1742 SQVPHLPVLVPPTPGTPATAMDRLAYLP-TAPQPF--------SSRHSSSP 1783


>gi|21217561 Shaw-related voltage-gated potassium channel protein 2
           isoform KV3.2a [Homo sapiens]
          Length = 613

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 13/49 (26%)

Query: 148 GPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIP 196
           G GRE+ F R                VF  VL+YY+TG ++CP  +  P
Sbjct: 97  GGGREFFFDR-------------HPGVFAYVLNYYRTGKLHCPADVCGP 132


>gi|21217563 Shaw-related voltage-gated potassium channel protein 2
           isoform KV3.2b [Homo sapiens]
          Length = 638

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 13/49 (26%)

Query: 148 GPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIP 196
           G GRE+ F R                VF  VL+YY+TG ++CP  +  P
Sbjct: 97  GGGREFFFDR-------------HPGVFAYVLNYYRTGKLHCPADVCGP 132


>gi|24497458 Shaw-related voltage-gated potassium channel protein 2
           isoform KV3.2c [Homo sapiens]
          Length = 558

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 13/49 (26%)

Query: 148 GPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIP 196
           G GRE+ F R                VF  VL+YY+TG ++CP  +  P
Sbjct: 97  GGGREFFFDR-------------HPGVFAYVLNYYRTGKLHCPADVCGP 132


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,719,413
Number of Sequences: 37866
Number of extensions: 828609
Number of successful extensions: 1688
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1677
Number of HSP's gapped (non-prelim): 31
length of query: 419
length of database: 18,247,518
effective HSP length: 105
effective length of query: 314
effective length of database: 14,271,588
effective search space: 4481278632
effective search space used: 4481278632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.