Guide to the Human Genome
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Name: KCNC2 Sequence: fasta or formatted (558aa) NCBI GI: 24497458
Description:

Shaw-related voltage-gated potassium channel protein 2 isoform KV3.2c

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [613aa] Shaw-related voltage-gated potassium channel protein 2 isoform KV...
alt prot [638aa] Shaw-related voltage-gated potassium channel protein 2 isoform KV...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         43           2
 C cysteine            2.5         14           2
 D aspartate           4.5         25           2
 E glutamate           5.9         33           3
 F phenylalanine       5.9         33           3
 G glycine             8.6         48           3
 H histidine           2.0         11           1
 I isoleucine          5.2         29           2
 K lysine              3.9         22           2
 L leucine            10.6         59           3
 M methionine          2.0         11           1
 N asparagine          3.8         21           2
 P proline             7.0         39           3
 Q glutamine           2.0         11           1
 R arginine            5.9         33           2
 S serine              5.4         30           2
 T threonine           6.5         36           2
 V valine              6.5         36           2
 W tryptophan          1.4          8           2
 Y tyrosine            2.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Shaw-related voltage-gated potassium channel protein... 
KCNC2                 0.965   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.965   Shaw-related voltage-gated potassium channel protein...
KCNC1                 0.643   Shaw-related voltage-gated potassium channel protei...
KCNC1                 0.640   Shaw-related voltage-gated potassium channel protein ...
KCNC4                 0.639   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.639   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.636   Shaw-related voltage-gated potassium channel protein...
KCNC3                 0.592   Shaw-related voltage-gated potassium channel protein...
KCNB1                 0.239   potassium voltage-gated channel, Shab-related subfami...
KCNB2                 0.236   potassium voltage-gated channel, Shab-related subfam...
KCNA1                 0.208   potassium voltage-gated channel subfamily A member ...
KCNA10                0.207   potassium voltage-gated channel, shaker-related subfa...
KCND1                 0.201   potassium voltage-gated channel, Shal-related subfam...
KCNA7                 0.201   potassium voltage-gated channel, shaker-related subf...
KCNF1                 0.201   potassium voltage-gated channel, subfamily F, member...
KCNA4                 0.198   potassium voltage-gated channel, shaker-related subfa...
KCND3                 0.197   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.197   potassium voltage-gated channel, Shal-related subfam...
KCNA2                 0.197   potassium voltage-gated channel, shaker-related subfa...
KCNS3                 0.197   potassium voltage-gated channel delayed-rectifier pr...
KCNA3                 0.196   potassium voltage-gated channel, shaker-related subf...
KCNA6                 0.193   potassium voltage-gated channel, shaker-related subfa...
KCND2                 0.193   potassium voltage-gated channel, Shal-related subfami...
KCNA5                 0.190   potassium voltage-gated channel, shaker-related subf...
KCNV1                 0.182   potassium channel, subfamily V, member 1 
KCNS2                 0.182   potassium voltage-gated channel, delayed-rectifier, ...
KCNS1                 0.176   potassium voltage-gated channel delayed-rectifier pr...
KCNG1                 0.171   potassium voltage-gated channel, subfamily G, member...
KCNG2                 0.165   potassium voltage-gated channel, subfamily G, member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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