Guide to the Human Genome
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Name: KCNC2 Sequence: fasta or formatted (638aa) NCBI GI: 21217563
Description:

Shaw-related voltage-gated potassium channel protein 2 isoform KV3.2b

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [613aa] Shaw-related voltage-gated potassium channel protein 2 isoform KV...
alt prot [558aa] Shaw-related voltage-gated potassium channel protein 2 isoform KV...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         45           2
 C cysteine            2.5         16           2
 D aspartate           4.5         29           2
 E glutamate           5.5         35           3
 F phenylalanine       5.3         34           3
 G glycine             8.8         56           3
 H histidine           1.7         11           1
 I isoleucine          5.2         33           2
 K lysine              3.8         24           2
 L leucine            10.8         69           3
 M methionine          1.7         11           1
 N asparagine          3.9         25           2
 P proline             7.8         50           3
 Q glutamine           1.6         10           1
 R arginine            6.9         44           2
 S serine              6.9         44           2
 T threonine           6.3         40           2
 V valine              5.6         36           2
 W tryptophan          1.3          8           2
 Y tyrosine            2.8         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Shaw-related voltage-gated potassium channel protein... 
KCNC2                 0.931   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.843   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.595   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.593   Shaw-related voltage-gated potassium channel protein...
KCNC1                 0.586   Shaw-related voltage-gated potassium channel protei...
KCNC1                 0.559   Shaw-related voltage-gated potassium channel protein ...
KCNC4                 0.556   Shaw-related voltage-gated potassium channel protein...
KCNC3                 0.517   Shaw-related voltage-gated potassium channel protein...
KCNB1                 0.209   potassium voltage-gated channel, Shab-related subfami...
KCNB2                 0.206   potassium voltage-gated channel, Shab-related subfam...
KCNA1                 0.181   potassium voltage-gated channel subfamily A member ...
KCNA10                0.181   potassium voltage-gated channel, shaker-related subfa...
KCND1                 0.176   potassium voltage-gated channel, Shal-related subfam...
KCNA7                 0.176   potassium voltage-gated channel, shaker-related subf...
KCNF1                 0.176   potassium voltage-gated channel, subfamily F, member...
KCND3                 0.174   potassium voltage-gated channel, Shal-related subfam...
KCNA4                 0.173   potassium voltage-gated channel, shaker-related subfa...
KCNA2                 0.172   potassium voltage-gated channel, shaker-related subfa...
KCNS3                 0.172   potassium voltage-gated channel delayed-rectifier pr...
KCNA3                 0.171   potassium voltage-gated channel, shaker-related subf...
KCND3                 0.171   potassium voltage-gated channel, Shal-related subfam...
KCNA6                 0.169   potassium voltage-gated channel, shaker-related subfa...
KCND2                 0.168   potassium voltage-gated channel, Shal-related subfami...
KCNA5                 0.166   potassium voltage-gated channel, shaker-related subf...
KCNV1                 0.159   potassium channel, subfamily V, member 1 
KCNS2                 0.159   potassium voltage-gated channel, delayed-rectifier, ...
KCNS1                 0.154   potassium voltage-gated channel delayed-rectifier pr...
KCNG1                 0.150   potassium voltage-gated channel, subfamily G, member...
KCNG2                 0.143   potassium voltage-gated channel, subfamily G, member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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