Guide to the Human Genome
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Name: KCND2 Sequence: fasta or formatted (630aa) NCBI GI: 9789987
Description:

potassium voltage-gated channel, Shal-related subfamily, member 2

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         53           3
 C cysteine            2.5         16           2
 D aspartate           3.8         24           2
 E glutamate           6.0         38           2
 F phenylalanine       5.7         36           2
 G glycine             5.2         33           2
 H histidine           2.5         16           3
 I isoleucine          6.0         38           3
 K lysine              3.3         21           2
 L leucine             7.1         45           2
 M methionine          2.4         15           1
 N asparagine          3.0         19           1
 P proline             5.2         33           2
 Q glutamine           3.8         24           2
 R arginine            7.1         45           3
 S serine              9.4         59           2
 T threonine           6.7         42           2
 V valine              7.1         45           2
 W tryptophan          0.8          5           1
 Y tyrosine            3.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, Shal-related subfami... 
KCND3                 0.761   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.753   potassium voltage-gated channel, Shal-related subfam...
KCND1                 0.647   potassium voltage-gated channel, Shal-related subfam...
KCNB2                 0.212   potassium voltage-gated channel, Shab-related subfam...
KCNB1                 0.205   potassium voltage-gated channel, Shab-related subfami...
KCNC1                 0.200   Shaw-related voltage-gated potassium channel protein ...
KCNC1                 0.199   Shaw-related voltage-gated potassium channel protei...
KCNA7                 0.196   potassium voltage-gated channel, shaker-related subf...
KCNA2                 0.193   potassium voltage-gated channel, shaker-related subfa...
KCNA3                 0.191   potassium voltage-gated channel, shaker-related subf...
KCNC4                 0.190   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.189   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.189   Shaw-related voltage-gated potassium channel protein...
KCNA1                 0.188   potassium voltage-gated channel subfamily A member ...
KCNA4                 0.187   potassium voltage-gated channel, shaker-related subfa...
KCNA10                0.186   potassium voltage-gated channel, shaker-related subfa...
KCNA5                 0.185   potassium voltage-gated channel, shaker-related subf...
KCNC3                 0.184   Shaw-related voltage-gated potassium channel protein...
KCNA6                 0.179   potassium voltage-gated channel, shaker-related subfa...
KCNF1                 0.176   potassium voltage-gated channel, subfamily F, member...
KCNC2                 0.174   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.174   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.174   Shaw-related voltage-gated potassium channel protein...
KCNS3                 0.170   potassium voltage-gated channel delayed-rectifier pr...
KCNV1                 0.166   potassium channel, subfamily V, member 1 
KCNG1                 0.160   potassium voltage-gated channel, subfamily G, member...
KCNS1                 0.154   potassium voltage-gated channel delayed-rectifier pr...
KCNS2                 0.154   potassium voltage-gated channel, delayed-rectifier, ...
KCNG3                 0.148   potassium voltage-gated channel, subfamily G, member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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