Guide to the Human Genome
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Name: BTBD10 Sequence: fasta or formatted (475aa) NCBI GI: 31044440
Description:

K+ channel tetramerization protein

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         23           5
 C cysteine            1.7          8           1
 D aspartate           6.3         30           3
 E glutamate           7.8         37           2
 F phenylalanine       2.7         13           2
 G glycine             6.3         30           2
 H histidine           3.4         16           2
 I isoleucine          5.7         27           2
 K lysine              5.5         26           2
 L leucine             5.5         26           1
 M methionine          2.5         12           1
 N asparagine          3.8         18           1
 P proline             6.3         30           2
 Q glutamine           3.2         15           1
 R arginine            8.8         42           3
 S serine             11.4         54           3
 T threonine           4.4         21           1
 V valine              5.5         26           2
 W tryptophan          0.6          3           1
 Y tyrosine            3.8         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   K+ channel tetramerization protein 
KCTD20                0.488   potassium channel tetramerisation domain containing ...
ARL6IP4               0.021   SRp25 nuclear protein isoform 4 
ARL6IP4               0.021   SRp25 nuclear protein isoform 2 
SFRS4                 0.019   splicing factor, arginine/serine-rich 4 
ZRANB2                0.019   zinc finger protein 265 isoform 2 
SFRS6                 0.018   arginine/serine-rich splicing factor 6 
ZRANB2                0.018   zinc finger protein 265 isoform 1 
ARL6IP4               0.018   SRp25 nuclear protein isoform 3 
CROP                  0.017   cisplatin resistance-associated overexpressed protei...
CROP                  0.017   cisplatin resistance-associated overexpressed protei...
SCAF1                 0.016   SR-related CTD-associated factor 1 
LOC100170229          0.016   hypothetical protein LOC100170229 
FLG                   0.016   filaggrin 
SFRS5                 0.016   splicing factor, arginine/serine-rich 5 
SFRS5                 0.016   splicing factor, arginine/serine-rich 5 
ARL6IP4               0.016   SRp25 nuclear protein isoform 1 
GARNL4                0.015   GTPase activating Rap/RanGAP domain-like 4 isoform ...
GARNL4                0.015   GTPase activating Rap/RanGAP domain-like 4 isoform ...
DDX46                 0.015   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
GPATCH8               0.015   G patch domain containing 8 
SFRS11                0.015   splicing factor, arginine/serine-rich 11 
SRRM2                 0.014   splicing coactivator subunit SRm300 
LOC643446             0.014   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.014   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.014   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.014   PREDICTED: similar to ribonucleic acid binding prote...
FHOD3                 0.013   formin homology 2 domain containing 3 
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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