Guide to the Human Genome
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Name: KCNV1 Sequence: fasta or formatted (500aa) NCBI GI: 7657289
Description:

potassium channel, subfamily V, member 1

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         30           2
 C cysteine            3.0         15           2
 D aspartate           5.2         26           2
 E glutamate           6.0         30           2
 F phenylalanine       5.4         27           2
 G glycine             5.8         29           2
 H histidine           1.0          5           1
 I isoleucine          6.2         31           2
 K lysine              3.0         15           2
 L leucine            13.0         65           4
 M methionine          2.0         10           1
 N asparagine          2.0         10           1
 P proline             3.4         17           1
 Q glutamine           3.6         18           2
 R arginine            7.2         36           2
 S serine              9.8         49           2
 T threonine           6.0         30           3
 V valine              6.8         34           3
 W tryptophan          1.6          8           3
 Y tyrosine            3.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel, subfamily V, member 1 
KCNB2                 0.374   potassium voltage-gated channel, Shab-related subfam...
KCNB1                 0.363   potassium voltage-gated channel, Shab-related subfami...
KCNS2                 0.331   potassium voltage-gated channel, delayed-rectifier, ...
KCNS3                 0.330   potassium voltage-gated channel delayed-rectifier pr...
KCNV2                 0.305   potassium channel, subfamily V, member 2 
KCNS1                 0.300   potassium voltage-gated channel delayed-rectifier pr...
KCNG1                 0.267   potassium voltage-gated channel, subfamily G, member...
KCNG4                 0.260   potassium voltage-gated channel, subfamily G, member...
KCNG2                 0.256   potassium voltage-gated channel, subfamily G, member ...
KCNG3                 0.253   potassium voltage-gated channel, subfamily G, member...
KCNF1                 0.252   potassium voltage-gated channel, subfamily F, member...
KCNG3                 0.249   potassium voltage-gated channel, subfamily G, member...
KCND1                 0.233   potassium voltage-gated channel, Shal-related subfam...
KCNC4                 0.222   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.222   Shaw-related voltage-gated potassium channel protein...
KCNC4                 0.222   Shaw-related voltage-gated potassium channel protein...
KCND2                 0.213   potassium voltage-gated channel, Shal-related subfami...
KCNC2                 0.211   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.211   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.211   Shaw-related voltage-gated potassium channel protein...
KCND3                 0.207   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.207   potassium voltage-gated channel, Shal-related subfam...
KCNC1                 0.205   Shaw-related voltage-gated potassium channel protein ...
KCNC1                 0.205   Shaw-related voltage-gated potassium channel protei...
KCNA4                 0.200   potassium voltage-gated channel, shaker-related subfa...
KCNA1                 0.197   potassium voltage-gated channel subfamily A member ...
KCNA10                0.195   potassium voltage-gated channel, shaker-related subfa...
KCNA2                 0.192   potassium voltage-gated channel, shaker-related subfa...
KCNA3                 0.190   potassium voltage-gated channel, shaker-related subf...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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