Guide to the Human Genome
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Name: NCOR2 Sequence: fasta or formatted (2462aa) NCBI GI: 116256445
Description:

nuclear receptor co-repressor 2 isoform 2

Referenced in:

Nuclear Receptors
Thyroid and Thyroid Hormone Receptor

Other entries for this name:
alt prot [2524aa] nuclear receptor co-repressor 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3        204           4
 C cysteine            0.5         12           1
 D aspartate           3.7         90           2
 E glutamate           8.9        220           3
 F phenylalanine       1.3         31           2
 G glycine             6.9        169           5
 H histidine           3.4         83           2
 I isoleucine          3.4         83           2
 K lysine              5.9        146           4
 L leucine             7.5        185           2
 M methionine          1.9         47           2
 N asparagine          2.2         55           2
 P proline            12.7        312           6
 Q glutamine           4.8        119          17
 R arginine            6.7        164           3
 S serine              9.8        241           3
 T threonine           5.4        134           3
 V valine              4.1        100           2
 W tryptophan          0.4         10           1
 Y tyrosine            2.3         57           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.992   nuclear receptor co-repressor 2 isoform 1 
NCOR1                 0.292   nuclear receptor co-repressor 1 
RCOR3                 0.018   REST corepressor 3 isoform a 
RCOR3                 0.018   REST corepressor 3 isoform d 
PRG4                  0.018   proteoglycan 4 isoform B 
PRG4                  0.018   proteoglycan 4 isoform A 
PRG4                  0.016   proteoglycan 4 isoform D 
PRG4                  0.016   proteoglycan 4 isoform C 
RCOR1                 0.016   REST corepressor 1 
RCOR2                 0.016   REST corepressor 2 
NEFH                  0.015   neurofilament, heavy polypeptide 200kDa 
RCOR3                 0.015   REST corepressor 3 isoform c 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
NACA                  0.014   nascent polypeptide-associated complex alpha subuni...
SETD1B                0.014   SET domain containing 1B 
RERE                  0.013   atrophin-1 like protein isoform b 
PCLO                  0.013   piccolo isoform 2 
PCLO                  0.013   piccolo isoform 1 
TTN                   0.013   titin isoform N2-A 
LOC283685             0.013   PREDICTED: golgi autoantigen, golgin subfamily a-li...
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
PRB2                  0.012   proline-rich protein BstNI subfamily 2 
KIAA0754              0.012   hypothetical protein LOC643314 
MLL2                  0.012   myeloid/lymphoid or mixed-lineage leukemia 2 
MAP1A                 0.012   microtubule-associated protein 1A 
GLTSCR1               0.012   glioma tumor suppressor candidate region gene 1 [Ho...
MLL4                  0.012   myeloid/lymphoid or mixed-lineage leukemia 4 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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