Guide to the Human Genome
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Name: KCTD6 Sequence: fasta or formatted (237aa) NCBI GI: 189571693
Description:

potassium channel tetramerisation domain containing 6

Referenced in:

Potassium Channels

Other entries for this name:
alt mRNA [237aa] potassium channel tetramerisation domain containing 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          6           1
 C cysteine            1.7          4           1
 D aspartate           7.6         18           2
 E glutamate           5.5         13           2
 F phenylalanine       5.9         14           1
 G glycine             5.1         12           2
 H histidine           3.4          8           2
 I isoleucine          3.8          9           2
 K lysine              4.2         10           1
 L leucine            10.1         24           2
 M methionine          4.2         10           2
 N asparagine          5.1         12           1
 P proline             5.1         12           1
 Q glutamine           3.0          7           1
 R arginine            5.9         14           1
 S serine              5.1         12           2
 T threonine          10.5         25           2
 V valine              5.5         13           2
 W tryptophan          1.3          3           1
 Y tyrosine            4.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel tetramerisation domain containing... 
KCTD6                 1.000   potassium channel tetramerisation domain containing...
KCTD21                0.264   potassium channel tetramerisation domain containing ...
KCTD15                0.184   potassium channel tetramerisation domain containing...
KCTD15                0.184   potassium channel tetramerisation domain containing...
KCTD15                0.184   potassium channel tetramerisation domain containing...
KCTD1                 0.180   potassium channel tetramerisation domain containing...
KCTD1                 0.180   potassium channel tetramerisation domain containing...
KCTD1                 0.180   potassium channel tetramerisation domain containing ...
KCTD4                 0.152   potassium channel tetramerisation domain containing...
KCTD7                 0.142   potassium channel tetramerisation domain containing ...
KCNRG                 0.140   potassium channel regulator isoform 2 
KCNRG                 0.140   potassium channel regulator isoform 1 
KCTD12                0.127   potassium channel tetramerisation domain containing ...
KCTD8                 0.123   potassium channel tetramerisation domain containing ...
KCTD16                0.116   potassium channel tetramerisation domain containing ...
KCTD14                0.108   potassium channel tetramerisation domain containing...
KCTD18                0.106   potassium channel tetramerization domain containing ...
KCTD11                0.104   potassium channel tetramerisation domain containing ...
KCTD3                 0.104   potassium channel tetramerisation domain containing ...
TNFAIP1               0.099   tumor necrosis factor, alpha-induced protein 1 [Homo...
SHKBP1                0.093   SH3KBP1 binding protein 1 
KCTD10                0.093   potassium channel tetramerisation domain containing ...
KCTD17                0.091   potassium channel tetramerisation domain containing...
KCTD13                0.082   potassium channel tetramerisation domain containing ...
KCTD5                 0.074   potassium channel tetramerisation domain containing 5...
KCTD19                0.070   potassium channel tetramerisation domain containing...
KCTD9                 0.070   potassium channel tetramerisation domain containing ...
KCND1                 0.068   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.063   potassium voltage-gated channel, Shal-related subfam...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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