Guide to the Human Genome
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Name: SLITRK1 Sequence: fasta or formatted (696aa) NCBI GI: 40217817
Description:

slit and trk like 1 protein

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         36           2
 C cysteine            2.7         19           1
 D aspartate           5.5         38           2
 E glutamate           5.0         35           2
 F phenylalanine       4.3         30           2
 G glycine             5.6         39           2
 H histidine           2.6         18           1
 I isoleucine          5.3         37           2
 K lysine              4.9         34           2
 L leucine            14.5        101           3
 M methionine          1.3          9           1
 N asparagine          8.6         60           3
 P proline             5.6         39           2
 Q glutamine           3.0         21           1
 R arginine            4.2         29           2
 S serine              7.6         53           2
 T threonine           5.3         37           2
 V valine              5.2         36           2
 W tryptophan          1.1          8           1
 Y tyrosine            2.4         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slit and trk like 1 protein 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK2               0.372   SLIT and NTRK-like family, member 2 
SLITRK4               0.368   slit and trk like 4 protein 
SLITRK5               0.354   SLIT and NTRK-like family, member 5 
SLITRK6               0.341   slit and trk like 6 
SLITRK3               0.333   slit and trk like 3 protein 
SLIT1                 0.079   slit homolog 1 
SLIT3                 0.072   slit homolog 3 
SLIT2                 0.067   slit homolog 2 
CHADL                 0.060   chondroadherin-like 
LRTM1                 0.054   leucine-rich repeats and transmembrane domains 1 [Ho...
LRRC15                0.053   leucine rich repeat containing 15 isoform a 
LRRC15                0.053   leucine rich repeat containing 15 isoform b 
RTN4R                 0.049   reticulon 4 receptor precursor 
IGSF10                0.049   immunoglobulin superfamily, member 10 
LRRC70                0.049   synleurin 
RTN4RL2               0.048   reticulon 4 receptor-like 2 
MXRA5                 0.046   adlican 
PXDN                  0.045   peroxidasin 
CPN2                  0.045   carboxypeptidase N, polypeptide 2, 83kD 
IGFALS                0.045   insulin-like growth factor binding protein, acid la...
IGFALS                0.045   insulin-like growth factor binding protein, acid labi...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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