Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLITRK3 Sequence: fasta or formatted (977aa) NCBI GI: 40217820
Description:

slit and trk like 3 protein

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         47           2
 C cysteine            2.1         21           1
 D aspartate           3.7         36           1
 E glutamate           6.3         62           4
 F phenylalanine       4.3         42           2
 G glycine             7.5         73           7
 H histidine           3.3         32           3
 I isoleucine          4.8         47           2
 K lysine              4.8         47           2
 L leucine            13.0        127           2
 M methionine          1.6         16           1
 N asparagine          5.5         54           3
 P proline             7.8         76           2
 Q glutamine           3.5         34           2
 R arginine            5.0         49           4
 S serine              7.5         73           4
 T threonine           5.1         50           2
 V valine              5.3         52           2
 W tryptophan          1.0         10           1
 Y tyrosine            3.0         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slit and trk like 3 protein 
SLITRK5               0.338   SLIT and NTRK-like family, member 5 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK2               0.317   SLIT and NTRK-like family, member 2 
SLITRK4               0.284   slit and trk like 4 protein 
SLITRK6               0.255   slit and trk like 6 
SLITRK1               0.234   slit and trk like 1 protein 
CHADL                 0.045   chondroadherin-like 
LRRC15                0.041   leucine rich repeat containing 15 isoform a 
LRRC15                0.041   leucine rich repeat containing 15 isoform b 
LRRC70                0.039   synleurin 
RTN4RL2               0.038   reticulon 4 receptor-like 2 
SLIT3                 0.038   slit homolog 3 
LRTM1                 0.036   leucine-rich repeats and transmembrane domains 1 [Ho...
RTN4R                 0.036   reticulon 4 receptor precursor 
SLIT2                 0.036   slit homolog 2 
PXDN                  0.036   peroxidasin 
SLIT1                 0.036   slit homolog 1 
LRFN5                 0.035   leucine rich repeat and fibronectin type III domain ...
ELFN1                 0.034   extracellular leucine-rich repeat and fibronectin t...
ELFN2                 0.034   leucine rich repeat containing 62 
CPN2                  0.034   carboxypeptidase N, polypeptide 2, 83kD 
LRTM2                 0.034   leucine-rich repeats and transmembrane domains 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press