Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 39930602
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39930602 TATA box binding protein like 2 [Homo sapiens]
(375 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39930602 TATA box binding protein like 2 [Homo sapiens] 749 0.0
gi|4507379 TATA box binding protein [Homo sapiens] 369 e-102
gi|4759234 TBP-like 1 [Homo sapiens] 135 6e-32
gi|112421108 capicua homolog [Homo sapiens] 45 1e-04
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 44 3e-04
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 40 0.004
gi|153792294 myopalladin [Homo sapiens] 39 0.006
gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2... 39 0.008
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 38 0.013
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 38 0.017
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 38 0.017
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 38 0.017
gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1... 36 0.049
gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa... 36 0.049
gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap... 36 0.064
gi|118918411 zinc finger protein 777 [Homo sapiens] 35 0.084
gi|11641275 potassium family, subfamily K, member 15 [Homo sapiens] 35 0.084
gi|146134388 YLP motif containing 1 [Homo sapiens] 35 0.084
gi|15451916 bone morphogenetic protein receptor type II precurso... 35 0.11
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 35 0.11
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 35 0.14
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 35 0.14
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 35 0.14
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 35 0.14
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 35 0.14
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.14
gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] 34 0.19
gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] 34 0.19
gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens] 34 0.19
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 34 0.19
>gi|39930602 TATA box binding protein like 2 [Homo sapiens]
Length = 375
Score = 749 bits (1934), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Query: 1 MASAPWPERVPRLLAPRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPL 60
MASAPWPERVPRLLAPRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPL
Sbjct: 1 MASAPWPERVPRLLAPRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPL 60
Query: 61 FSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHE 120
FSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHE
Sbjct: 61 FSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHE 120
Query: 121 TEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSL 180
TEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSL
Sbjct: 121 TEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSL 180
Query: 181 ASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMR 240
ASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMR
Sbjct: 181 ASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMR 240
Query: 241 IREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCD 300
IREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCD
Sbjct: 241 IREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCD 300
Query: 301 VRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYE 360
VRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYE
Sbjct: 301 VRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYE 360
Query: 361 AFENIYPILKGFKKA 375
AFENIYPILKGFKKA
Sbjct: 361 AFENIYPILKGFKKA 375
>gi|4507379 TATA box binding protein [Homo sapiens]
Length = 339
Score = 369 bits (948), Expect = e-102
Identities = 204/350 (58%), Positives = 237/350 (67%), Gaps = 21/350 (6%)
Query: 33 MEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAFNSNPEVKETSG 92
M+Q + L Y A+ G P P+FSP++PY + P+ + +
Sbjct: 1 MDQNNS-LPPYAQGLASPQGAMTPGIPIFSPMMPYGTGL------------TPQPIQNTN 47
Query: 93 DFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGLGLNSSSLS 152
S ++ + Q+ + Q + + ++ + Q Q + +Q V S S
Sbjct: 48 SLSILEEQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTS 107
Query: 153 NSHSQ--------LHPGDTDSVQPSPEKPNSDSLSLASITPMTPMTPISECCGIVPQLQN 204
+Q L T + P P + +TP+TP TP SE GIVPQLQN
Sbjct: 108 QQATQGTSGQAPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQN 167
Query: 205 IVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSE 264
IVSTVNL CKLDLK IAL A+NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSE
Sbjct: 168 IVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSE 227
Query: 265 EQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPEL 324
EQSRLAARKYARVVQKLGFPA+FLDFKIQNMVGSCDV+FPIRLEGLVLTHQQFSSYEPEL
Sbjct: 228 EQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPEL 287
Query: 325 FPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 374
FPGLIYRM+KPRIVLLIFVSGKVVLTGAK R+EIYEAFENIYPILKGF+K
Sbjct: 288 FPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 337
>gi|4759234 TBP-like 1 [Homo sapiens]
Length = 186
Score = 135 bits (340), Expect = 6e-32
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 322 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPIL 369
PEL P + YR+ R L IF +G + +TG ++ + A E IYP +
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKA-VATAVEQIYPFV 178
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 44.7 bits (104), Expect = 1e-04
Identities = 55/206 (26%), Positives = 79/206 (38%), Gaps = 17/206 (8%)
Query: 5 PWPERVPRLLAPRLPSYPP-PPPTVGLRSMEQEETYLELY----LDQCAAQDGLA----P 55
P P +P P S PP PPP S + ET + D GL P
Sbjct: 1230 PAPPPLPETWTPTARSSPPLPPPAEERTSAKGPETMASKFPSSSSDWRVPGQGLENRGEP 1289
Query: 56 PRSPLFSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPV 115
P P +P + S+ A PE KE +G V + P + T ++ D V
Sbjct: 1290 PTPPSPAPAPAVAPGGSSESSSGRAAGDTPERKEAAGTGKKVKVRPPPLKKTFDSVDNRV 1349
Query: 116 ISKHETEENSESQS---PQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEK 172
+S+ + EE P+ LPSP+ Q L + ++ S+ + TD + +PE
Sbjct: 1350 LSEVDFEERFAELPEFRPEEVLPSPTLQ--SLATSPRAILGSYRKKRKNSTD-LDSAPED 1406
Query: 173 PNSDSLSL--ASITPMTPMTPISECC 196
P S + S P TP S C
Sbjct: 1407 PTSPKRKMRRRSSCSSEPNTPKSAKC 1432
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 43.5 bits (101), Expect = 3e-04
Identities = 56/203 (27%), Positives = 77/203 (37%), Gaps = 33/203 (16%)
Query: 5 PWPERV-PRLLAPRL--------PSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAP 55
PWPER PR A R PS P PP L S E L A D AP
Sbjct: 988 PWPERRPPRPAATRTAPPTPSPGPSASPGPPGPALTSDSSRELTPHSALTSEATSD--AP 1045
Query: 56 PRSPLFSPVVPYDMYILNASNPDTAFNSNPEVKETSGDF--SSVDLSFLPDEVTQENKDQ 113
SP PD A +NP++ TS DF S+ D S +P + +
Sbjct: 1046 DTSP---------------PTPDPASRTNPDLILTSPDFALSTPDSSVVPALTPEPSPTP 1090
Query: 114 -PVISKHETEENSESQSPQSRLPSPS---EQDVGLGLNSSSLSNSHSQLHPGDTDSVQPS 169
P + K T + S S P+ E D L+++ S++ S+ S P
Sbjct: 1091 LPTLPKELTSDPSTPSEVTSLSPTSEQVPESDTTPDLDTTPYSSTVSEYSRSPDPSPSPH 1150
Query: 170 PEKPNSDSLSLASITPMTP-MTP 191
P +++ IT + P +TP
Sbjct: 1151 PTTTPDPTMAPDPITTLNPTVTP 1173
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 39.7 bits (91), Expect = 0.004
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 59 PLFSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQP---V 115
P F ++P D N N A N F+S+ L L DE+ + K+ P V
Sbjct: 610 PFFEGLLPRD----NPRNTRFAINF----------FTSIGLGGLTDELREHLKNTPKVIV 655
Query: 116 ISKHETEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSV 166
K + E+N S S S S SE D + SS S+S S D+ S+
Sbjct: 656 AQKPDVEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSI 706
>gi|153792294 myopalladin [Homo sapiens]
Length = 1320
Score = 39.3 bits (90), Expect = 0.006
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 25/206 (12%)
Query: 19 PSYP--PPPPTVG---LRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILN 73
PS P PPP + L S + ++ + ++ L+Q Q+ PP SP P+ M +LN
Sbjct: 642 PSSPVKEPPPVLAKPKLDSTQLQQLHNQVLLEQHQLQN--PPPSSP---KEFPFSMTVLN 696
Query: 74 ASNPDTAFNSNPEVKETSGDFSSV--DLSFLPD----EVTQENKDQPVISKHETEEN-SE 126
++ P S+ +VK S S+ F P T PV + T +
Sbjct: 697 SNAPPAVTTSSKQVKAPSSQTFSLARPKYFFPSTNTTAATVAPSSSPVFTLSSTPQTIQR 756
Query: 127 SQSPQSRLPS-PSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQP--SPEKPNSDSLSLASI 183
+ S +S L S PS Q G LS + L PG T+ P + P+ + +
Sbjct: 757 TVSKESLLVSHPSVQTKSPG----GLSIQNEPLPPGPTEPTPPPFTFSIPSGNQFQPRCV 812
Query: 184 TPMTPMTPISECCGIVPQLQNIVSTV 209
+P+ P++P S V L +++ ++
Sbjct: 813 SPI-PVSPTSRIQNPVAFLSSVLPSL 837
>gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2
[Homo sapiens]
Length = 659
Score = 38.9 bits (89), Expect = 0.008
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 48 AAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVT 107
AAQ GL P R +P ++++ ++ + F + E+ T V + +L T
Sbjct: 118 AAQSGL-PVRIESIKCELPLPRFMMSKNDGEIRFGNPAELHGTK-----VQIPYL---TT 168
Query: 108 QENKDQPVISKHETEENSESQSPQSRLPS--PSEQDVGLGLNSSSLSNSHSQLHPGDTDS 165
++N + + + + E S + SP + PS P Q V L S L +S Q+HP ++
Sbjct: 169 EKNSFKRMDDEDKQETQSPTMSPLASPPSSPPHYQRVPLSHGYSKLRSSAEQMHPAPYEA 228
Query: 166 VQPSPEKPNSDS 177
QP + S S
Sbjct: 229 RQPLVQPEGSSS 240
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 38.1 bits (87), Expect = 0.013
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Query: 19 PSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPP--RSPLFSPVVPYDMYILNASN 76
P PP PTV ++ E ++ + ++ G P +S L + PY + N+S+
Sbjct: 858 PGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPYSQPMNNSSS 917
Query: 77 ----PDTAFNSNPEVKETSG------DFSSVDLSFLPDEVTQENKDQPVISKHETEENSE 126
++ P + +S D S S LP + + K++ ++S
Sbjct: 918 LMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKADGKEEGTPQPESKSKDSY 977
Query: 127 SQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPS--PEKPNSDSLSLASIT 184
S S+ P+P V ++ SS S S H ++DS+ P+ P+S S ++ T
Sbjct: 978 SSQGISQPPTPGNLPVPSPMSPSSA--SISSFHGDESDSISSPGWPKTPSSPKSSSSTTT 1035
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 37.7 bits (86), Expect = 0.017
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 78 DTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSRLPSP 137
D++ +S+P V ++ +S ++ LP+E + + P + ++ EN ES +SR S
Sbjct: 475 DSSRSSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPEN-ESNDRRSRRYSV 533
Query: 138 SEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPMTPISECCG 197
SE+ G S + +L ++Q +P++ S S +TP P+ P S
Sbjct: 534 SERSFG--------SRTTKKL-----STLQSAPQQQTSSSPPPPLLTPPPPLQPASSISD 580
Query: 198 IVPQL 202
P L
Sbjct: 581 HTPWL 585
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 37.7 bits (86), Expect = 0.017
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 76 NPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSRLP 135
+P T++ + E ++S + SS LS E +E D S+ N +SP+S
Sbjct: 369 DPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQAD----SESSESLNFSEESPESPED 424
Query: 136 SPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS 182
S GL +SSS + + H + DS + DS S S
Sbjct: 425 ENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRSKEDSNSTES 471
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 37.7 bits (86), Expect = 0.017
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 76 NPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSRLP 135
+P T++ + E ++S + SS LS E +E D S+ N +SP+S
Sbjct: 353 DPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQAD----SESSESLNFSEESPESPED 408
Query: 136 SPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS 182
S GL +SSS + + H + DS + DS S S
Sbjct: 409 ENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRSKEDSNSTES 455
>gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1
[Homo sapiens]
Length = 660
Score = 36.2 bits (82), Expect = 0.049
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 48 AAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVT 107
AAQ GL P R +P ++++ ++ + F + E+ T V + +L E
Sbjct: 118 AAQSGL-PVRIESIKCELPLPRFMMSKNDGEIRFGNPAELHGTK-----VQIPYLTTEKN 171
Query: 108 QENKDQPVISKHETEENSESQSPQSRLPS--PSEQDVGLGLNSSSLSNSHSQLHPGDTDS 165
+ + ET+ S + SP + PS P Q V L S L +S Q+HP ++
Sbjct: 172 SFKRMDDEDKQQETQ--SPTMSPLASPPSSPPHYQRVPLSHGYSKLRSSAEQMHPAPYEA 229
Query: 166 VQPSPEKPNSDS 177
QP + S S
Sbjct: 230 RQPLVQPEGSSS 241
>gi|56788364 tubulin, gamma complex associated protein 6 [Homo
sapiens]
Length = 1819
Score = 36.2 bits (82), Expect = 0.049
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 102 LPDEVTQENKDQPVISKHETEENSE---SQSPQSRLPSPSEQDVGLGLNSSSLS------ 152
L DE + + V H+ +E + S PQ P P + G G +S S
Sbjct: 796 LEDEKHIQEMLKAVSEAHQPQEPPDVLLSVHPQVTSPGPEHPEGGQGCDSGSAEQHSPAW 855
Query: 153 ---NSHSQLHP----------GDTDSVQPSPEKPNSDSLSLASITPMTPMTPISECCGIV 199
N L P G Q +P SDSLS+ P+ P S G+V
Sbjct: 856 DGWNRPGLLTPQPLKPLAVGAGGRGLQQAEGARPFSDSLSIGDFLPVGPGAEPSVQTGMV 915
Query: 200 PQLQNIVSTVNL 211
P L+ + T+NL
Sbjct: 916 PLLEVALQTINL 927
>gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo
sapiens]
Length = 525
Score = 35.8 bits (81), Expect = 0.064
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 68 DMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSES 127
D Y A D S P++ E + V S +E +E +++ + E EE+SE
Sbjct: 278 DKYRSEALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEV 337
Query: 128 QSPQSRLPSPSEQD 141
Q Q + SP+E+D
Sbjct: 338 QGEQPKPASPAEED 351
>gi|118918411 zinc finger protein 777 [Homo sapiens]
Length = 831
Score = 35.4 bits (80), Expect = 0.084
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 27/165 (16%)
Query: 32 SMEQEETYLELYLD---QCAAQDGLAPPRS-PLFSPVVPYDMYILNASNPDTAFNSNPEV 87
S+ QEET + + Q + PP+ P SP +P S P T S+
Sbjct: 13 SVPQEETLRQAPAGLPRETLFQSRVLPPKEIPSLSPTIPRQ-----GSLPQT---SSAPK 64
Query: 88 KETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGLGLN 147
+ETSG V L P + +Q + +Q P P+ +EQ+V L
Sbjct: 65 QETSGRMPHV-LQKGPSLLCSAASEQETSLQGPLASQEGTQYPP---PAAAEQEVSL--- 117
Query: 148 SSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPMTPI 192
SHS H ++ SPE P D L+L+ P T M P+
Sbjct: 118 -----LSHSPHHQ---EAPVHSPEAPEKDPLTLSPTVPETDMDPL 154
>gi|11641275 potassium family, subfamily K, member 15 [Homo sapiens]
Length = 330
Score = 35.4 bits (80), Expect = 0.084
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 1 MASAPWPERVPRLLAPRLPSYPPPP----PTVGLRSMEQEETYLELY-LDQCAAQD-GLA 54
+ASA WPER R +PR P P P RS+ + ++ L++CA + G +
Sbjct: 248 VASADWPERAARPPSPRPPGAPESRGLWLPRRPARSVGSASVFCHVHKLERCARDNLGFS 307
Query: 55 PPRSP 59
PP SP
Sbjct: 308 PPSSP 312
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 35.4 bits (80), Expect = 0.084
Identities = 45/178 (25%), Positives = 63/178 (35%), Gaps = 33/178 (18%)
Query: 19 PSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPR--SPLFSPVVPYDMYILNASN 76
P PPPP L +Q++ ++ Q GL P SP SP VP Y+
Sbjct: 104 PPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYM----P 159
Query: 77 PDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSR--- 133
P ++ P+ P QP + + S SQSP S+
Sbjct: 160 PSQSYMPPPQP---------------PPSYYPPTSSQPYLPPAQP---SPSQSPPSQSYL 201
Query: 134 LPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPMTP 191
P+PS +SSS S S+ S Q SP +P+ + P P P
Sbjct: 202 APTPSYS------SSSSSSQSYLSHSQSYLPSSQASPSRPSQGHSKSQLLAPPPPSAP 253
>gi|15451916 bone morphogenetic protein receptor type II precursor
[Homo sapiens]
Length = 1038
Score = 35.0 bits (79), Expect = 0.11
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 66 PYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENS 125
PY Y ++ D+ +++ VK S + S +S P + ++N++ N
Sbjct: 542 PYPDYSSSSYIEDSIHHTDSIVKNISSEHS---MSSTPLTIGEKNRNSI---------NY 589
Query: 126 ESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPG-DTDSVQPSPEKPNSDSLSLASIT 184
E Q Q+R+PSP L N+++ + + G T S P P++ N + ++A
Sbjct: 590 ERQQAQARIPSPETSVTSLSTNTTTTNTTGLTPSTGMTTISEMPYPDETNLHTTNVAQSI 649
Query: 185 PMTPM 189
TP+
Sbjct: 650 GPTPV 654
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 35.0 bits (79), Expect = 0.11
Identities = 48/203 (23%), Positives = 72/203 (35%), Gaps = 46/203 (22%)
Query: 23 PPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVV--PYDMYILNASNPDTA 80
P PP+ +E+ TY RSP +P P S T
Sbjct: 2231 PSPPSTATAPVEESTTY----------------HRSPGSTPTTHFPASSTTSGHSEKSTI 2274
Query: 81 FNSNPEVKETSGDFS------------------SVDLSFLPDEVTQENKDQPVISKHETE 122
F+S+P+ T+ + S +++ LP T P +S+ T
Sbjct: 2275 FHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTT-----PGLSEASTT 2329
Query: 123 ENSESQSPQSRLPSPSEQDVGLGLNS----SSLSNSHSQLHPGDTDSVQPSPEKPNSDSL 178
S +SP + L S +G+G S S ++HS + P T + S E S
Sbjct: 2330 FYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGLSEESTTVYSS 2389
Query: 179 SLASI-TPMTPMTPISECCGIVP 200
S S T + P TP + G P
Sbjct: 2390 SPGSTETTVFPRTPTTSVRGEEP 2412
Score = 32.0 bits (71), Expect = 0.93
Identities = 43/182 (23%), Positives = 65/182 (35%), Gaps = 47/182 (25%)
Query: 23 PPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVV--PYDMYILNASNPDTA 80
P PP+ +E+ TY RSP +P P S T
Sbjct: 1148 PSPPSTATAPVEESTTY----------------HRSPGSTPTTHFPASSTTSGHSEKSTI 1191
Query: 81 FNSNPEVKETSGDFS------------------SVDLSFLPDEVTQENKDQPVISKHETE 122
F+S+P+ T+ + S +++ LP T P +S+ T
Sbjct: 1192 FHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTT-----PGLSEASTT 1246
Query: 123 ENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS 182
S +SP + L S +G+G S++ S+ PG T S SP + LS S
Sbjct: 1247 FYSSPRSPTTTLSPASMTSLGVGEESTT-----SRSQPGSTHST-VSPASTTTPGLSEES 1300
Query: 183 IT 184
T
Sbjct: 1301 TT 1302
Score = 32.0 bits (71), Expect = 0.93
Identities = 43/182 (23%), Positives = 65/182 (35%), Gaps = 47/182 (25%)
Query: 23 PPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVV--PYDMYILNASNPDTA 80
P PP+ +E+ TY RSP +P P S T
Sbjct: 2705 PSPPSTATAPVEESTTY----------------HRSPGSTPTTHFPASSTTSGHSEKSTI 2748
Query: 81 FNSNPEVKETSGDFS------------------SVDLSFLPDEVTQENKDQPVISKHETE 122
F+S+P+ T+ + S +++ LP T P +S+ T
Sbjct: 2749 FHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTT-----PGLSEASTT 2803
Query: 123 ENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS 182
S +SP + L S +G+G S++ S+ PG T S SP + LS S
Sbjct: 2804 FYSSPRSPTTTLSPASMTSLGVGEESTT-----SRSQPGSTHST-VSPASTTTPGLSEES 2857
Query: 183 IT 184
T
Sbjct: 2858 TT 2859
Score = 32.0 bits (71), Expect = 0.93
Identities = 43/182 (23%), Positives = 65/182 (35%), Gaps = 47/182 (25%)
Query: 23 PPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVV--PYDMYILNASNPDTA 80
P PP+ +E+ TY RSP +P P S T
Sbjct: 3788 PSPPSTATAPVEESTTY----------------HRSPGSTPTTHFPASSTTSGHSEKSTI 3831
Query: 81 FNSNPEVKETSGDFS------------------SVDLSFLPDEVTQENKDQPVISKHETE 122
F+S+P+ T+ + S +++ LP T P +S+ T
Sbjct: 3832 FHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTT-----PGLSEASTT 3886
Query: 123 ENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS 182
S +SP + L S +G+G S++ S+ PG T S SP + LS S
Sbjct: 3887 FYSSPRSPTTTLSPASMTSLGVGEESTT-----SRSQPGSTHST-VSPASTTTPGLSEES 3940
Query: 183 IT 184
T
Sbjct: 3941 TT 3942
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 34.7 bits (78), Expect = 0.14
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 31/167 (18%)
Query: 15 APRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNA 74
A R+P P R + + ++ +L + + G A P PVV +N
Sbjct: 596 AARIPGIP--------RHSGPQYSMMQPHLQRQHSNPGHAGP-----FPVVSVHNTTINP 642
Query: 75 SNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQ-PVISKHETEENSESQSPQ-- 131
++P TA +N TS ++++L +P EN P I + E+ S
Sbjct: 643 TSPTTATMANANRGPTSPSVTAIEL--IPSVTNPENLPSLPDIPPIQLEDAGSSSLDNLL 700
Query: 132 ------SRLP-------SPSEQDVGLGLNSSSLSNSHSQLHPGDTDS 165
S LP +PS L SS LSNSH+ + P T S
Sbjct: 701 SRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTSS 747
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 34.7 bits (78), Expect = 0.14
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 31/167 (18%)
Query: 15 APRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNA 74
A R+P P R + + ++ +L + + G A P PVV +N
Sbjct: 596 AARIPGIP--------RHSGPQYSMMQPHLQRQHSNPGHAGP-----FPVVSVHNTTINP 642
Query: 75 SNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQ-PVISKHETEENSESQSPQ-- 131
++P TA +N TS ++++L +P EN P I + E+ S
Sbjct: 643 TSPTTATMANANRGPTSPSVTAIEL--IPSVTNPENLPSLPDIPPIQLEDAGSSSLDNLL 700
Query: 132 ------SRLP-------SPSEQDVGLGLNSSSLSNSHSQLHPGDTDS 165
S LP +PS L SS LSNSH+ + P T S
Sbjct: 701 SRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTSS 747
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 34.7 bits (78), Expect = 0.14
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 31/165 (18%)
Query: 9 RVPRLLAPRLPSYPPP-----------PPTVGLRSMEQEETYLELY-----LDQCAAQDG 52
++P LL P PS PPP PP + + + + L AQ
Sbjct: 759 QLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSP 818
Query: 53 L---APPRSPLFSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDE---- 105
L +P SP SP+ P + + AS +S+ +S FSS S P
Sbjct: 819 LPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS 878
Query: 106 ------VTQENKDQ--PVISKHETEENSESQSPQSRLPSPSEQDV 142
+ +N + P+IS + E +E P+ S +EQDV
Sbjct: 879 AISSVVSSGDNLEASLPMISFKQEELENEGLKPREEPQSAAEQDV 923
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 34.7 bits (78), Expect = 0.14
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 31/165 (18%)
Query: 9 RVPRLLAPRLPSYPPP-----------PPTVGLRSMEQEETYLELY-----LDQCAAQDG 52
++P LL P PS PPP PP + + + + L AQ
Sbjct: 960 QLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSP 1019
Query: 53 L---APPRSPLFSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDE---- 105
L +P SP SP+ P + + AS +S+ +S FSS S P
Sbjct: 1020 LPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS 1079
Query: 106 ------VTQENKDQ--PVISKHETEENSESQSPQSRLPSPSEQDV 142
+ +N + P+IS + E +E P+ S +EQDV
Sbjct: 1080 AISSVVSSGDNLEASLPMISFKQEELENEGLKPREEPQSAAEQDV 1124
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 34.7 bits (78), Expect = 0.14
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 31/165 (18%)
Query: 9 RVPRLLAPRLPSYPPP-----------PPTVGLRSMEQEETYLELY-----LDQCAAQDG 52
++P LL P PS PPP PP + + + + L AQ
Sbjct: 960 QLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSP 1019
Query: 53 L---APPRSPLFSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDE---- 105
L +P SP SP+ P + + AS +S+ +S FSS S P
Sbjct: 1020 LPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS 1079
Query: 106 ------VTQENKDQ--PVISKHETEENSESQSPQSRLPSPSEQDV 142
+ +N + P+IS + E +E P+ S +EQDV
Sbjct: 1080 AISSVVSSGDNLEASLPMISFKQEELENEGLKPREEPQSAAEQDV 1124
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.14
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 103 PDEVTQENKD-QPVISKHETEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPG 161
P E +E + +P +K + +S S S S S S +SSS S+S S
Sbjct: 2586 PKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S 2642
Query: 162 DTDSVQPSPEKPNSDSLSLASITPMTPMTP 191
+ S PSP KP +L P +P P
Sbjct: 2643 SSSSSSPSPAKPGPQALP----KPASPKKP 2668
Score = 29.6 bits (65), Expect = 4.6
Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 35 QEETYLELYLDQCAAQDGLAPPRSPLFSP------VVPYDMYILNASNPDTAFNSNPEVK 88
+E + L LDQ +Q L P + P + N+ + +F S E +
Sbjct: 1275 EERPAVSLTLDQSQSQASLEAVEVPSMASSWGGPHFSPEHKELSNSPLRENSFGSPLEFR 1334
Query: 89 ETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGLGLNS 148
+ + ++ F + +E+ + P +++ ET+ + + + +R S ++
Sbjct: 1335 NSGPLGTEMNTGFSSE--VKEDLNGPFLNQLETDPSLDMKEQSTRSSGHSSSELSPDAVE 1392
Query: 149 SSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPMTP 191
+ +S+ + D+V +P + S S S + P TP
Sbjct: 1393 KAGMSSNQSISSPVLDAVPRTPSRERSSSASSPEMKDGLPRTP 1435
>gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]
Length = 1164
Score = 34.3 bits (77), Expect = 0.19
Identities = 45/188 (23%), Positives = 66/188 (35%), Gaps = 34/188 (18%)
Query: 22 PPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAF 81
PPP P + Y+ + L Q R P + ++LN +
Sbjct: 395 PPPAPLC------HSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDRGSE--- 445
Query: 82 NSNPEVKETSGDFSSVDLSFLP---------DEVTQENKDQPVISKHETE---ENSESQS 129
E G SV LS LP ++ +++K++ IS+ +E +E
Sbjct: 446 -------EPPGSKGSVTLSDLPGFLGDLASEEDSIEKDKEEAAISRELSEITTAEAEPVV 498
Query: 130 PQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPM 189
P+ SP +D G S +HS SV P P + D L TP
Sbjct: 499 PRGGFDSPFYRDSLPG----SQRKTHSAASSSQGASVNPEPLHSSLDKLG--PDTPKQAF 552
Query: 190 TPISECCG 197
TPI CG
Sbjct: 553 TPIDLPCG 560
>gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens]
Length = 1113
Score = 34.3 bits (77), Expect = 0.19
Identities = 45/188 (23%), Positives = 66/188 (35%), Gaps = 34/188 (18%)
Query: 22 PPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAF 81
PPP P + Y+ + L Q R P + ++LN +
Sbjct: 344 PPPAPLC------HSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDRGSE--- 394
Query: 82 NSNPEVKETSGDFSSVDLSFLP---------DEVTQENKDQPVISKHETE---ENSESQS 129
E G SV LS LP ++ +++K++ IS+ +E +E
Sbjct: 395 -------EPPGSKGSVTLSDLPGFLGDLASEEDSIEKDKEEAAISRELSEITTAEAEPVV 447
Query: 130 PQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPM 189
P+ SP +D G S +HS SV P P + D L TP
Sbjct: 448 PRGGFDSPFYRDSLPG----SQRKTHSAASSSQGASVNPEPLHSSLDKLG--PDTPKQAF 501
Query: 190 TPISECCG 197
TPI CG
Sbjct: 502 TPIDLPCG 509
>gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens]
Length = 1163
Score = 34.3 bits (77), Expect = 0.19
Identities = 45/188 (23%), Positives = 66/188 (35%), Gaps = 34/188 (18%)
Query: 22 PPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAF 81
PPP P + Y+ + L Q R P + ++LN +
Sbjct: 394 PPPAPLC------HSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDRGSE--- 444
Query: 82 NSNPEVKETSGDFSSVDLSFLP---------DEVTQENKDQPVISKHETE---ENSESQS 129
E G SV LS LP ++ +++K++ IS+ +E +E
Sbjct: 445 -------EPPGSKGSVTLSDLPGFLGDLASEEDSIEKDKEEAAISRELSEITTAEAEPVV 497
Query: 130 PQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPM 189
P+ SP +D G S +HS SV P P + D L TP
Sbjct: 498 PRGGFDSPFYRDSLPG----SQRKTHSAASSSQGASVNPEPLHSSLDKLG--PDTPKQAF 551
Query: 190 TPISECCG 197
TPI CG
Sbjct: 552 TPIDLPCG 559
>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
Length = 1812
Score = 34.3 bits (77), Expect = 0.19
Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 30/184 (16%)
Query: 11 PRLLAPRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMY 70
P+ PR P PPPP + E+ + L + +D AP R F P+ P
Sbjct: 177 PQPRGPRTPPGPPPPD-------DDEDDPVPLPVSGDKEED--APHREDYFEPISP---- 223
Query: 71 ILNASNPDTAFNSNPEVKE---TSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSES 127
N+ + ++ EV+E G+ D+ +E E+ + V S E EE E
Sbjct: 224 DRNSVPQEGQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDEDEDDRRTVDSIPEEEEEDEE 283
Query: 128 QSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSD----SLSLASI 183
+ + E D G SS G D + + + PN D + LAS+
Sbjct: 284 EEGEE--DEEGEGDDGYEQISSD--------EDGIADLERETFKYPNFDVEYTAEDLASV 333
Query: 184 TPMT 187
PMT
Sbjct: 334 PPMT 337
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,045,976
Number of Sequences: 37866
Number of extensions: 822245
Number of successful extensions: 6276
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 5890
Number of HSP's gapped (non-prelim): 500
length of query: 375
length of database: 18,247,518
effective HSP length: 104
effective length of query: 271
effective length of database: 14,309,454
effective search space: 3877862034
effective search space used: 3877862034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.