Guide to the Human Genome
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Name: MYPN Sequence: fasta or formatted (1320aa) NCBI GI: 153792294
Description:

myopalladin

Referenced in:

Lysosomes and Related Organelles
Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         80           2
 C cysteine            2.0         27           1
 D aspartate           4.2         56           3
 E glutamate           7.6        100           2
 F phenylalanine       3.3         43           2
 G glycine             5.1         67           4
 H histidine           2.3         31           2
 I isoleucine          4.5         60           2
 K lysine              5.3         70           2
 L leucine             7.1         94           2
 M methionine          1.5         20           1
 N asparagine          4.2         56           2
 P proline             9.8        129           3
 Q glutamine           5.6         74           2
 R arginine            5.7         75           2
 S serine             11.7        155           3
 T threonine           5.8         77           2
 V valine              5.8         76           2
 W tryptophan          0.5          7           1
 Y tyrosine            1.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myopalladin 
PALLD                 0.210   palladin 
MYOT                  0.085   myotilin isoform b 
MYOT                  0.085   myotilin isoform a 
TTN                   0.075   titin isoform novex-3 
TTN                   0.075   titin isoform N2-A 
TTN                   0.075   titin isoform novex-2 
TTN                   0.075   titin isoform novex-1 
TTN                   0.075   titin isoform N2-B 
MYLK                  0.044   myosin light chain kinase isoform 3B 
MYLK                  0.044   myosin light chain kinase isoform 2 
MYLK                  0.040   myosin light chain kinase isoform 3A 
MYLK                  0.040   myosin light chain kinase isoform 1 
OBSCN                 0.033   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.033   obscurin, cytoskeletal calmodulin and titin-interac...
IGSF10                0.033   immunoglobulin superfamily, member 10 
SPEG                  0.033   SPEG complex locus 
HMCN1                 0.032   hemicentin 1 
HMCN2                 0.031   PREDICTED: hemicentin 2 
HMCN2                 0.031   PREDICTED: hemicentin 2 
HMCN2                 0.031   PREDICTED: hemicentin 2 
LOC100292387          0.030   PREDICTED: similar to hemicentin 2 
DCC                   0.030   deleted in colorectal carcinoma 
CNTN4                 0.029   contactin 4 isoform a precursor 
ROBO1                 0.028   roundabout 1 isoform d 
ROBO1                 0.028   roundabout 1 isoform c 
ROBO1                 0.028   roundabout 1 isoform b 
LOC642132             0.028   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.028   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.028   roundabout 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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